Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00797 ATGTATCTTTCCAAAGGTCACAAGCATGAAGTTGTTTTCATTTTATGGTTTTGCTGCTATTTGGCACTTGTTGCTGCACAGGATAATATCACCGACCCTATTGAAGTTGAAGCATTAAAAGCCATAAAAAAAATGTTGGTTGATCCTAATAGAAATTTGAGCAATTGGAATCGCGGAGACCCATGTACTTCTCGCTGGACAGGAGTTTTGTGTTTCAATGAAACATTATTCGATGGCTATTTACATGTTCAAGAATTGCAACTAATGAATTTGAGCTTGTCCGGAAATTTGGCACCAGAAATTGGCAGCTTACTTTATATGGAAAGATTGAACTTCATGTGGAACAAAATAACGGGGAGTATTCCGAAGGAAATTGGAAATATCAAATCTTTATTCCTCTTACTTCTGAATGGAAATCAATTAACAGGTTCACTACCAGATGAGCTTGGCTTTCTTCCAAACCTAGATAGGATACAAATCGATCAGAACAATATATCAGGACCTCTACCTAAATCATTTGCAAACCTGAACAAGACAAAGCACTTTCACATGAACAATAATTCAATTAGCGGCCAAATCCCACCGGAACTATACAGACTACCAAAACTCGTTCACTTCCTTCTTGATAACAACAAATTATCTGGATATCTTCCTCCTGAGCTATCAAGACTGCCGAACTTACTTATACTGCAACTTGACAACAATAACTTCGAAGGAAATACCATTCCAGATACTTATAGCAACATGACAAAATTGTTAAAGCTGAGCCTTAAGAATTGCAACTTGCGAGGACCAATTCCTGATTTAAGCCGGATACCACACCTTCTTTATCTTGACCTCAGTTTCAATCAGTTGAATGAATCAATTCCTTCCAAACTTTCAGAGAACATCACAACCATTGATTTATCAAACAATGAGCTTACTGGAACCATTCCATCCTCCTTTTCTAGTCTTTCACGTCTTCAGAGATTGTCTCTTGCAAACAATTCATTTAGTGGCAGTGTTTCTTCCACGATTTGGCAGGACAAGACTGTAAATGGAACAGAAAAGTTTATTTTGGAGTTGGAAAATAATCGATTTACAACTGTATCAGGCAATATCGATCTTCCAACAAATGTCACAGTCTTGCTTCATGGGAATCCTGTATGCTCAAATAATAACAGCCTGATTCAGCTCTGTAATTCTGAAGGTGTTAATGACACAAGTGACCTTGTTCCAACAAACGGCATTGGCGTCTGTCCTGCTCAATCATGCCCGCCACCTTATGAGTTCTCTTTGAATTGTTTCTGTGCAGCGCCATTGCTTGTTCGTTATCGACTAAAAAGTCCCGGGTTTTCGGATTTCATTCCATACATAAATGATTTTGAGGAATACCTGACTACTGGTCTTAGTATAAATACAAGTCAGCTAAACTTTACTTTTCAATGGGAAGCAGGACCTCGGCTCAGAATGAACTTGAAGTTCTTTCCTGTATATTTTGGTCCAAATAGTTCTCATACTTTCAATGAAACTGAGGTCCAACGAATTAAAAGCATGTTCACTGAATGGAATATTCCTGACAGTGATTTGTTTGGGCCATATGAATTGTTGAACTTCAATCTAGGTTCTTACCAGAATGTGACTACCACCTCTTCAAAATCAGGGATAAGTACAGGAGCAATAGTTGGCATAGTCTTAGGGGCAATTGCATGTGCAGTGACGCTATCTGCGATTGTTACTCTTCTTATATTAAGAACAAAATTGAAAGATTATCGTGCAGTTTCCAAACGGCGTCGCGTGTCTAAATCCTCAATAAAAATGGATGGCGTAAGGTCTTTCACTTATGAAGAAATGTCCTCTGCTACGAACCATTTTAGTAGCTCTGCTCAAGTTGGACAAGGAGGCTATGGGAAAGTATATAAAGGTATTCTTCCTGATGGCACTGCTGTTGCTATAAAACGTGCACAGGAGGGATCACTGCAAGGCGAAAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTGCATCATCGCAACCTTGTGTCTTTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATATATGCCAAACGGAACACTGAGGGATCACCTTTCTGTTACGGCTAAAGAACCTCTGACTTTTATCATGAGATTGAAGATTGCATTAGGATCAGCTAAAGGTCTCATGTATCTACACAATGAAGCTGATCCTCCAATATTTCATCGAGATGTCAAGGCCAGCAACATATTATTGGACTCTAAGCTCTCTGCAAAAGTGGCTGATTTTGGACTATCCCGGCTTGCCCCAGTTCCAGATATGGAAGGAATTGTGCCTGGTCATGTATCTACTGTGGTCAAGGGGACACCGGGTTACCTTGATCCGGAGTACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTACAGTCTTGGTGTTGTGTTTCTTGAAATTTTGACTGGAATGCATCCTATCTCACATGGAAAAAATATTGTTAGAGAGGTCAATCTTTCATACCAATCGGGCGTAATTTTTTCAATCATCGATCCACAAATGGGATCATATCCATCTGAACACGTGGAGAAATTTTTGACATTGGCCCTCAAGTGTTGTAACGATGAGCCAGATAATCGGCCTAAAATGGCAGAGGTGGTTAGAGAGCTCGAAAACATATGGAATGTGATGCCAGAATCAGATACAAGGAGAGCTGAATCTATAACCAGTGTCAGTGATTCAAGCAAAGCAATGAGTACACCATCTTCATCATCTGCTATAAGGACTCCTTTTGTATCAGGTGATGTATCAGGTAGTGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2850 0.3954 MYLSKGHKHEVVFILWFCCYLALVAAQDNITDPIEVEALKAIKKMLVDPNRNLSNWNRGDPCTSRWTGVLCFNETLFDGYLHVQELQLMNLSLSGNLAPEIGSLLYMERLNFMWNKITGSIPKEIGNIKSLFLLLLNGNQLTGSLPDELGFLPNLDRIQIDQNNISGPLPKSFANLNKTKHFHMNNNSISGQIPPELYRLPKLVHFLLDNNKLSGYLPPELSRLPNLLILQLDNNNFEGNTIPDTYSNMTKLLKLSLKNCNLRGPIPDLSRIPHLLYLDLSFNQLNESIPSKLSENITTIDLSNNELTGTIPSSFSSLSRLQRLSLANNSFSGSVSSTIWQDKTVNGTEKFILELENNRFTTVSGNIDLPTNVTVLLHGNPVCSNNNSLIQLCNSEGVNDTSDLVPTNGIGVCPAQSCPPPYEFSLNCFCAAPLLVRYRLKSPGFSDFIPYINDFEEYLTTGLSINTSQLNFTFQWEAGPRLRMNLKFFPVYFGPNSSHTFNETEVQRIKSMFTEWNIPDSDLFGPYELLNFNLGSYQNVTTTSSKSGISTGAIVGIVLGAIACAVTLSAIVTLLILRTKLKDYRAVSKRRRVSKSSIKMDGVRSFTYEEMSSATNHFSSSAQVGQGGYGKVYKGILPDGTAVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSVTAKEPLTFIMRLKIALGSAKGLMYLHNEADPPIFHRDVKASNILLDSKLSAKVADFGLSRLAPVPDMEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEILTGMHPISHGKNIVREVNLSYQSGVIFSIIDPQMGSYPSEHVEKFLTLALKCCNDEPDNRPKMAEVVRELENIWNVMPESDTRRAESITSVSDSSKAMSTPSSSSAIRTPFVSGDVSGSDLVSGVIPSIKPR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00797 949 SMART serkin_6 618 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00797 949 PANTHER RECEPTOR-LIKE PROTEIN 55 42 890 - -
Trre5g00797 949 SMART LRR_typ_2 272 296 IPR003591 -
Trre5g00797 949 SMART LRR_typ_2 318 342 IPR003591 -
Trre5g00797 949 SMART LRR_typ_2 200 224 IPR003591 -
Trre5g00797 949 SMART LRR_typ_2 152 175 IPR003591 -
Trre5g00797 949 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Trre5g00797 949 Gene3D Ribonuclease Inhibitor 187 294 IPR032675 -
Trre5g00797 949 MobiDBLite consensus disorder prediction 901 928 - -
Trre5g00797 949 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 694 904 - -
Trre5g00797 949 FunFam Leucine-rich repeat protein kinase family protein 582 693 - -
Trre5g00797 949 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
Trre5g00797 949 SUPERFAMILY L domain-like 45 394 - -
Trre5g00797 949 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Trre5g00797 949 Gene3D Ribonuclease Inhibitor 295 385 IPR032675 -
Trre5g00797 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Trre5g00797 949 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Trre5g00797 949 SUPERFAMILY Protein kinase-like (PK-like) 603 913 IPR011009 -
Trre5g00797 949 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Trre5g00797 949 CDD STKc_IRAK 624 890 - -
Trre5g00797 949 Pfam Protein kinase domain 620 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00797 949 Gene3D Ribonuclease Inhibitor 34 186 IPR032675 -
Trre5g00797 949 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00797 949 Gene3D Transferase(Phosphotransferase) domain 1 694 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00797 Trre-Chr5 5431548 5439974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00797 18 900 Receptor kinase-like Gene Family AT5G01950 58.621 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre5g00797 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00797 - - gmx:100786467 1446.8