Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00796 ATGAATGTTTTGATATTTTTAGGACCGGCGAGATGTTACAGGCAGATAAAGAACAAACCATACCCAAAGTCACGATTCTGCCGCGGGGTTCCGGATCCAAAGATCAGAATCTATGACGTAGGAATGAAGAAAAAAGGCGTAGACGAGTTCCCATTATGCGTTCATTTAGTATCATGGGAGAAAGAAAATGTGTCTAGCGAAGCACTAGAGGCGGCAAGAATCGCGTGCAACAAGTACATGTCGAAGTTTGCTGGGAAAGATGCATTTCATTTGCGAGTGAGGGTTCATCCTTTTCATGTGTTGCGAATTAATAAGATGTTATCGTGTGCTGGGGCGGATAGGTTGCAGACGGGGATGAGAGGTGCGTTTGGGAAACCGTTAGGGACGTGTGCTAGGGTTAATATTGGTCAGGTGCTGTTGTCTGTTAGATGCAAGAATGGTAATGGTCATCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAGAAAATCATTGTTAGCAGAAAGTGGGGATTTACTAAATTGAGTCAAGATGAGTACTTGAAGTTGAAATCTGAGAACAGAATTGTGGCGGATGGGGTAAATGCCAAGGTTCTTGGCTGCCATGGACCTTTGGCCAATCGTGTGCCGGGAAGAGCTTTCTTGCCAATGTCTGCATAG 675 0.4519 MNVLIFLGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPLCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVNIGQVLLSVRCKNGNGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSQDEYLKLKSENRIVADGVNAKVLGCHGPLANRVPGRAFLPMSA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00796 224 CDD Ribosomal_L16_L10e 45 170 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trre5g00796 224 SUPERFAMILY Ribosomal protein L16p/L10e 9 177 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trre5g00796 224 NCBIfam 50S ribosomal protein L16 8 178 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre5g00796 224 ProSitePatterns Ribosomal protein L10e signature. 112 133 IPR018255 GO:0003735|GO:0005840|GO:0006412
Trre5g00796 224 Gene3D Ribosomal protein L10e/L16 7 219 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trre5g00796 224 PANTHER 60S RIBOSOMAL PROTEIN L10 9 216 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre5g00796 224 Pfam Ribosomal protein L16p/L10e 16 170 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trre5g00796 224 FunFam 60S ribosomal protein L10 7 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00796 Trre-Chr5 5426895 5428151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00796 9 224 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 84.722 7.29e-137 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00796 K02866 - gmx:100779884 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00796 5 5426895 5428151 Trre5g00796 5 5426895 5428151 ECH