Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00788 ATGAAGCTCCAATTTGATTCACAGTTTTTCACATCCATTTTGTTTATTGGTTTTGTAGCACTGTTGTTTCGTTTGTACACTAATTTTGTACATAAGCCAAATGTTCTTCGTTCTAAGCTAAAGAAACAAGGTATAAATGGTCCACCTCCAACTATATTGCTTGGAAATCTAATGGAGATAATGAAATCTCAGCTTACCACTCCAAATTCTCATTCTTTTCTCACTCACAACACTGCCTCTCTTGTCTTTCCCAAATTTGAAGAATGGAGGAAACTATATGGTGAAGTGTTCATGTTTTCTTTTGGAAACATTCAATCATTGTGTGTGAGCCAAACAGATATGATAAAGGAATTCACCACATGCACTTCTTTTGACTTGGGATTACCTCCATTTCACAAGAAATTTTTTGTGCCTTTGTTGGGTGATGGTATTTTAACATCAAATGGGACTACATGGGCCCATCATAGAAAGACCTTAGCTCCAGAATTATACATCGATAAAGTTAAGGGAATGGTGAATATTGTTAGTGAGTCTGGTGAATCTCTGCTAAACTTATGGAATAGTAAAATAGAGGCTCAAAGTGGAGGAGTTGCTGATATAAATATTCATGAGGACTTGAAAATATTCTCTGGTAATGTTATTTCAAGAGCATGCTTTGGAAGTGATTATTGCAAAGGGGAAGAAATATTCTTGAAACTTGGAACTCTCCAAGAAGTTGGTTTTTCCTGGAAAAATCTCTCTTCAGCAGTACCTGGCATGAGATACCTTCCAACAAAGACCAACAGAAAATCATGGATATTAGCAAAGGAAGTGAAAAGTTTGATACTTGAAGTGGTGAAGGAAAGAAAGGAAAAAACTAGTTTTGAAAACGACTTGCTGCAAATGGTTATTGAAGGTGCAAAGAAAAGTAATCTCACACAAGAGGCAGGTGATCGTTTTATTATTGATAACTGCAAAAATATATACTTGGCAGGCTTTGAATCAACTGCAGTTGTTTCTTCATGGTGTCTTATGTTATTGGCCACAAACCAAAACTGGCAAGATCGCGCTCGTGCCGAGGTACTAGAAATTTGCAGTGGTAGAATCCCAGATTATGATATGCTTTCAAAGATGAAACAGCTTACAATGATTATTCATGAAACTTTGCGCCTTTATCCACCGGCACCTTTATTGCTAAGGCATGCTTTCAAGGACATGAAATTCGGGAATATCGATGTCCCAAAGGGAACTGGCCTTTGGATATTGATAATAAGTTTGCATACAAATCCTGATATATGGGGAGATGATGCCTATAAATTCAATCCAGAAAGATTTGCTAATGGAGTTGCAGGTGCATGTAAGCATCCACATGCATATATGCCATTTGGAGTTGGCCCAAGAATTTGTCTTGGACAAAACTTGGCCATGCTTGAACTTAAGATGCTCATAGCTCTCATTTTGTCCAATTTCTCTTTCTCTCTTTCTCCTAGATACATACATTCACCTGCACTTGGGATTACAATGAAACCTGACCATGGAGTCCAGCTCCTAGTAACAAAGTTGTGA 1545 0.3754 MKLQFDSQFFTSILFIGFVALLFRLYTNFVHKPNVLRSKLKKQGINGPPPTILLGNLMEIMKSQLTTPNSHSFLTHNTASLVFPKFEEWRKLYGEVFMFSFGNIQSLCVSQTDMIKEFTTCTSFDLGLPPFHKKFFVPLLGDGILTSNGTTWAHHRKTLAPELYIDKVKGMVNIVSESGESLLNLWNSKIEAQSGGVADINIHEDLKIFSGNVISRACFGSDYCKGEEIFLKLGTLQEVGFSWKNLSSAVPGMRYLPTKTNRKSWILAKEVKSLILEVVKERKEKTSFENDLLQMVIEGAKKSNLTQEAGDRFIIDNCKNIYLAGFESTAVVSSWCLMLLATNQNWQDRARAEVLEICSGRIPDYDMLSKMKQLTMIIHETLRLYPPAPLLLRHAFKDMKFGNIDVPKGTGLWILIISLHTNPDIWGDDAYKFNPERFANGVAGACKHPHAYMPFGVGPRICLGQNLAMLELKMLIALILSNFSFSLSPRYIHSPALGITMKPDHGVQLLVTKL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00788 514 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 Gene3D Cytochrome P450 42 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 PANTHER CYTOCHROME P450 FAMILY MEMBER 33 506 - -
Trre5g00788 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Trre5g00788 514 Pfam Cytochrome P450 83 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00788 514 SUPERFAMILY Cytochrome P450 47 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00788 Trre-Chr5 5357103 5359211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00788 114 512 Cytochrome P450 AT5G24900 44.526 4.82e-121 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00788 K24544 - gmx:100785420 739.184