Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00777 ATGGACACCACGCTCTCCGTTCTCAAGGATTACTTCGGATTTTTAAGTTTTCGACCTTATCAGAAAGAGGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTTATGGCTACTGGTAGTGGCAAGTCTTTGTGTTATCAAGTACCTCCATTGGTTGTGAAAAAGACTGGGATAGTTGTGAGCCCTCTAATATCATTGATGCAAGATCAGGTAATGGCTTTGAAACAGCGAGGTATCAAAGCTGAATATCTTTCAAGTGCTCAGAAGGATCACACCGTTCAGAGTAAAGCTGAGCGTGGTCAATTTGATATTCTGTTCATGACTCCTGAGAAGGCATGCTCAATTCCTACTAGTTTCTGGTCCAACTTGCTAAAAGAAGGAATTAGTCTTTTTGCTGTTGATGAAGCACATTGTATATCGGAATGGGGGCATGATTTTAGGGTCGAATACAAGCAGTTAGACAAGTTACGTAGTGTTCTGTTAGATGTTCCTTATGTTGGTCTAACGGCAACTGCTACTGAAAAGGTTCGGTTTGACATCGCCAATTCCCTGAAGATGAATAATCCTTACATTGTAGTTGGTTCGTTTGATCGCCCAAATCTTTTCTATGGTGTCAAGCAATTTAACCGTGGACAATCTTTTATTGATGAGATTGTGGAAGAAATTTCAAAAGAAGTTGCTAATTGTTGTTCAACTATAATCTACTGCACAACAATCAAAGATGCAGAACAGATATATAAATCACTTACAGAAGTAGGTATTAATGCTGGAATGTACCATGGCCAAATGAATGCAAAATCACGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAAATGCAAATTATGGTGGCTACAATTGCCTTTGGCATGGGAATAGATAAACCTAATATACGAAAAGTGATTCACTATGGCTGCCCTAAGAATCTAGAGTCCTATTACCAGGAAAGTGGGCGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGATTTTTATGCTGCAGACTTAAAATCGGAAAACCAAAAAAAAGCTGTTATGGAGTCATTGCTGGCTGCTCAACGCTATTGTTTGTCAGGAACTTGCAGAAGAAAGTTCTTGCTTGAACACTTCGGGGAAAAAATTGCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGCAGGAGCGTGACCTGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGCAGATGGGGCCTTAATATGCCGATTGACATCCTTCGCGGTTCTCGAGCAAAGAAAATAATCGATGCTCAGTTTGACAAACTTCCACTTCATGGACTTGGAAAAACATACCAAGCAAATTGGTGGAAAGCACTCGGACAACAATTGATTTCTCTAGGTTATTTGAAGGAGGTTTTCGGTGACATGTACAGAACTGTAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCTTCTTCTAGACCAGACTATCAACCTCCTTTGGTTTTGCCATTAGTTGGTGAGCTTGAAGAAGAGGAAAATAGAAGCACAGAAGAATTCAAAAATTTGGCCACTTCAGAATCACAAGGTTTCTCGGAGGCTGACGGAAAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAAGCTTGCAAGAAGTGTCGGAACAGCTCCATATGCTCTATGTGGTGATCAAACAATCAAAAGAATTGCTTTGACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTTAATCAGCACCTAGTTACAAGATATGGAGACTATTTTATTCAAGCTATTCAGAAACTATCGAAAGAACTAAACCTATCATTGGATGGAGAGGTAAGTGTGCAACCTATTGAAGTACGAAAAGTATCTCCGATAGTAACCAACAAATCAACGAAGTTGCAAGGAGCGAAGTTTGAAGCATGGAAAATGTGGCATGAAGAAGGTCTTTCTATTCAGAAGATTGCTAACTTTCCAGGTAGATCAGCTCCTATTCAAGAACAAACTGTTGCTGGGTATCTGCTGGATGCTGCCCAAGAAGGATTACCGTTTGATTGGACTAGATTTTGTGAGGCGATAGGGCTGCAACACGATTTCATGTCAGCAATTCAGGGCGCTATTGTAAAAGTTGGATCTGCCGATAAGTTGAAGCCTATAAAAAATGAATTGCCAGAAGAAATAACTTACCCACACATCAAGGCTTACTTGACGATGCGAACCTGTGGAATATCCTTAGAAGACATTCAACCTGAAGGTCACCAGTCTGTCAAAGATGGTGAAGCCGTAAATAATGCGTCAGATTTGTCAGAGCCTCCTTTAGAAATACGCCAAACAGAAAGTCATCTTAAAGCTGACATTTCTCCCAAACGTTTGATAGAAATTGATGCAGTACCTTCTGGACCTGTCAATGGTTGCCAGGTACAGAATCTTCCATTAGCCTGTGAGGGGGAATTCACAAACAAACGACTGAAAGTCAGTGAAACTGAGGAAGTGAGTTTAATTAAATTGAAAGCTACAGCGAGTTCTGTTGTAGAGTGGCTGAAGAATCATGATGAAGGGGCTAATTTGAATGATATTTTGGAGCACTTCAGTGCATCCAATGAAGATTCCATTGTTGAACTGCTAAGTTGCCTTGAGTGCGACTTCATGATATATAAGAAAGGTAATATGTACAGGGCTATGTAA 2724 0.4001 MDTTLSVLKDYFGFLSFRPYQKEVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLSSAQKDHTVQSKAERGQFDILFMTPEKACSIPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRSVLLDVPYVGLTATATEKVRFDIANSLKMNNPYIVVGSFDRPNLFYGVKQFNRGQSFIDEIVEEISKEVANCCSTIIYCTTIKDAEQIYKSLTEVGINAGMYHGQMNAKSREESHRLFVRDEMQIMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYAADLKSENQKKAVMESLLAAQRYCLSGTCRRKFLLEHFGEKIAADRCGNCDNCTVSKQERDLSREAFLLMACIHSCKGRWGLNMPIDILRGSRAKKIIDAQFDKLPLHGLGKTYQANWWKALGQQLISLGYLKEVFGDMYRTVSVSSKGEQFLASSRPDYQPPLVLPLVGELEEEENRSTEEFKNLATSESQGFSEADGKLYQMLLEERLKLARSVGTAPYALCGDQTIKRIALTRPSTKARLANIDGVNQHLVTRYGDYFIQAIQKLSKELNLSLDGEVSVQPIEVRKVSPIVTNKSTKLQGAKFEAWKMWHEEGLSIQKIANFPGRSAPIQEQTVAGYLLDAAQEGLPFDWTRFCEAIGLQHDFMSAIQGAIVKVGSADKLKPIKNELPEEITYPHIKAYLTMRTCGISLEDIQPEGHQSVKDGEAVNNASDLSEPPLEIRQTESHLKADISPKRLIEIDAVPSGPVNGCQVQNLPLACEGEFTNKRLKVSETEEVSLIKLKATASSVVEWLKNHDEGANLNDILEHFSASNEDSIVELLSCLECDFMIYKKGNMYRAM 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00777 907 Gene3D - 2 198 IPR027417 -
Trre5g00777 907 CDD SF2_C_RecQ 200 335 - -
Trre5g00777 907 PANTHER DNA HELICASE RECQ FAMILY MEMBER 5 664 - -
Trre5g00777 907 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 371 IPR001650 -
Trre5g00777 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Trre5g00777 907 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Trre5g00777 907 SMART hrdc7 541 621 IPR002121 GO:0003676
Trre5g00777 907 CDD DEXHc_RecQ 5 199 - -
Trre5g00777 907 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Trre5g00777 907 FunFam ATP-dependent DNA helicase 1 198 - -
Trre5g00777 907 Pfam Helix-turn-helix domain 653 749 IPR029491 -
Trre5g00777 907 Pfam HRDC domain 546 611 IPR002121 GO:0003676
Trre5g00777 907 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Trre5g00777 907 Gene3D HRDC domain 539 621 IPR044876 -
Trre5g00777 907 SMART helicmild6 245 326 IPR001650 -
Trre5g00777 907 FunFam ATP-dependent DNA helicase 200 401 - -
Trre5g00777 907 FunFam ATP-dependent DNA helicase 402 526 - -
Trre5g00777 907 Pfam RecQ zinc-binding 351 400 IPR032284 -
Trre5g00777 907 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Trre5g00777 907 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Trre5g00777 907 Gene3D - 402 526 IPR036388 -
Trre5g00777 907 ProSiteProfiles HRDC domain profile. 541 621 IPR002121 GO:0003676
Trre5g00777 907 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre5g00777 907 Pfam RQC domain 404 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre5g00777 907 FunFam ATP-dependent DNA helicase 537 627 - -
Trre5g00777 907 SUPERFAMILY HRDC-like 540 620 IPR010997 GO:0000166|GO:0044237
Trre5g00777 907 Gene3D - 200 401 IPR027417 -
Trre5g00777 907 SMART ultradead3 13 210 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00777 Trre-Chr5 5291679 5301416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00777 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 22.000 2.80e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00777 K03654 - gmx:100797777 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00777 5 5291679 5301416 Trre5g00777 5 5291679 5301416 ECH