Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00746 ATGCGAAGACAACAACTCAACCTCCTAAATCTAATAACAACCTTAATCACCTTATTATGTTCATGGAGCTTCTTAACACAAGCTGATCCTCAAACACGTTTAATCAACAAAGGTTGTAGCACATATAACGCAACAAACTTGTCAAATTTCTACCAAAATCTAAACACAACTTTGTTAGACTTGAAAACACAAATAGGAAATGAAAACAAGCATTTTGCTACGGCTCAATCAGCTAAAGGAGCAAATCCTGTTTATGCTTTGTTTCAGTGTAGGAATTATCTCTCTAATTCTGATTGTTCTTCTTGTTTCGCCGTTGCCGCTGCACAAATCCGGAATTGCTCCGCTGGTTCCAACGGTGCCCGTGTTATTTATGATGGTTGCTTCCTTAGGTATGAGAGCAATGGATTCTTCGACCAAACAACTCTACCTGGCAACAGTGTGCTTTGTGGAACCCAAACAGCAAATGGAGCCACTGCTTTTGATGCAGCTGCACAACAAGTACTATTGGATCTACAAACAGCAACACCTAAAATTCCTGGTTTCTTTGCAGCTACCAAGACACCAATTGCTGGAAATGCAATCTATGCTATTGCACAATGTGCTGAAACAGTTACTGAAAGTGGTTGTTTAGATTGTTTAACAGTTGGATTCACCAACATACAAGGTTGTTTTCCTAATACAGATGGTGAAGCATTTGATGCTGGTTGTTTTATGAGATACTCAGAGAAATCTTTCTTTGCTGATAACCAAACCATTGATATTACACCCTTCTTGAAACAAGAAAGTTCAAGTAACAAGGGAGCAATTATTGGTGGTGTTGTTGGAGGTGTAGCCATTGTTCTGATTCTCCTTGCACTATTTGTTTGGCTTAGGCTCAAGAAGAAACCTAAGAGACATCCTAGAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCTGTTACTTATCGGTATAATGATTTGAAGTCTGCAACAAAAAATTTTAGTGATGAAAATAAATTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTCTAAAAAATGGTAACGTAGTAGCTGTCAAGAAAATGATGTTAGGCCATTCCGGCAAAATGGATGAACAATTTGAAAGTGAAGTGAAGCTTATAAGTAACGTTCATCACAGGAATTTAGTTCGACTACTCGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAACAGCCTTGACAAATTCTTATTTGGTGAAAAGAAGGGTTCCCTAAACTGGATTCAACGGTATGATATAATTTTAGGCACAGCAAGAGGTTTGGCCTATCTACATGAAGATTTCCATGTTTGCATCATACATAGGGATATAAAGGCTAGCAACATTCTCTTAGATGATGATCTTCAACCTAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTACCAGAAGATCAATCTCATGTTAGCACAAGATTTGCAGGAACATTGGGATACACTGCACCAGAATATGCAATACATGGCCAGTTATCGGTGAAGGCTGATGCCTACAGTTTCGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGCAGTGAGTTGAGGGAAGATGCTGATGGTGAATTCCTTCTTCAAAGGGCATGGAAACTATACGAGGTAGATAGACACTTGGATTTAGTTGACAAGACATTGAACCCTAGTGACTATGACGCAGAAGAAGTGAAGAAAGTTATAGCGATAGCGTTGCTTTGCACTCAAGCAACAGCTGCTACAAGGCCAACTATGTCTGAAATAGTAGTTCTACTCAAAAGCAAGAACTTTGTGGAGCATATGAGACCAACTATGCCCGTCTTTGTTAACTCTAACTTGAGGCCTCAAAGTCGGACAGACACATCCACCTCGACTGCATCTTCTACATCTAATGCTACTGTTTCCACTTCTATATTATCAGCTAGATGA 1950 0.3959 MRRQQLNLLNLITTLITLLCSWSFLTQADPQTRLINKGCSTYNATNLSNFYQNLNTTLLDLKTQIGNENKHFATAQSAKGANPVYALFQCRNYLSNSDCSSCFAVAAAQIRNCSAGSNGARVIYDGCFLRYESNGFFDQTTLPGNSVLCGTQTANGATAFDAAAQQVLLDLQTATPKIPGFFAATKTPIAGNAIYAIAQCAETVTESGCLDCLTVGFTNIQGCFPNTDGEAFDAGCFMRYSEKSFFADNQTIDITPFLKQESSSNKGAIIGGVVGGVAIVLILLALFVWLRLKKKPKRHPRGDILGATELKGPVTYRYNDLKSATKNFSDENKLGEGGFGDVYKGTLKNGNVVAVKKMMLGHSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDKFLFGEKKGSLNWIQRYDIILGTARGLAYLHEDFHVCIIHRDIKASNILLDDDLQPKIADFGLARLLPEDQSHVSTRFAGTLGYTAPEYAIHGQLSVKADAYSFGVVVLEIISGQKSSELREDADGEFLLQRAWKLYEVDRHLDLVDKTLNPSDYDAEEVKKVIAIALLCTQATAATRPTMSEIVVLLKSKNFVEHMRPTMPVFVNSNLRPQSRTDTSTSTASSTSNATVSTSILSAR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00746 649 FunFam Cysteine-rich receptor-like protein kinase 2 293 404 - -
Trre5g00746 649 SMART serkin_6 328 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00746 649 FunFam Cysteine-rich receptor-like protein kinase 2 31 136 - -
Trre5g00746 649 ProSiteProfiles Protein kinase domain profile. 328 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00746 649 FunFam Cysteine-rich receptor-like protein kinase 2 144 245 - -
Trre5g00746 649 CDD STKc_IRAK 334 600 - -
Trre5g00746 649 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Trre5g00746 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 637 - -
Trre5g00746 649 Pfam Protein tyrosine and serine/threonine kinase 331 598 IPR001245 GO:0004672|GO:0006468
Trre5g00746 649 Pfam Salt stress response/antifungal 39 133 IPR002902 -
Trre5g00746 649 Pfam Salt stress response/antifungal 152 242 IPR002902 -
Trre5g00746 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Trre5g00746 649 MobiDBLite consensus disorder prediction 617 649 - -
Trre5g00746 649 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
Trre5g00746 649 Gene3D Transferase(Phosphotransferase) domain 1 405 612 - -
Trre5g00746 649 Gene3D - 145 245 IPR038408 -
Trre5g00746 649 Gene3D - 31 136 IPR038408 -
Trre5g00746 649 FunFam Cysteine-rich receptor-like protein kinase 2 405 607 - -
Trre5g00746 649 ProSiteProfiles Gnk2-homologous domain profile. 142 245 IPR002902 -
Trre5g00746 649 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Trre5g00746 649 SUPERFAMILY Protein kinase-like (PK-like) 312 622 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00746 Trre-Chr5 5121531 5128460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00746 1 649 Receptor kinase-like Gene Family AT1G70520 35.660 1.00e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00746 PK_Tyr_Ser-Thr 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00746 - - gmx:100813585 969.533