Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00723 ATGGAATGGGAGAGCGAGATGGAGATTAGGGTTCATATGGATCAAGATGGATTAACTTGTTTCAGTGTTAGACCTTCAAACTCAATTGGAAATGGAGTTTCTTTGAATACTGGATCACATTCTGTTACACATATTCAACTCAACGATCATTTATCTTGCGCGAATGACTACGCTCTTAAGATAAGGAAACCATATACTATAACAAAACAGAGAGAAAAATGGACAGGTGAAGACCATAAGTTCTTAGAAGCCTTAAAGCTGTATGGCCGGGCCTGGCGACGCATTGAAGAACATGTTGGCACAAAGACTGCGGTACAAATTCGAAGTCATGCTCAGAAATTTTTCTCTAAGGTTCTTCGCGACAAAAGTGAGTATACTACAAAAACTAAGGGCTCGATTGAAATTCCTCCTCCACGACCGAAACGAAAGCCTGCGCATCCTTACCCTCGGAAGCTAGTTGAGAGGACCGGTAGTGAAGGAATTTCAATCCTGAAAAAGGCAATGGATTCTATTTCTCTGAAGACGTCAGATTTTGATCAAGAAAACCAATCTCCCAAATCAATAATATCTATACCCGGTTCCGAGAGCCTTGGTTCGTTTGATTCAGATACACCAAATGCAAGTTTATCTCCAATATCATCGATTAGCTGTGTTTGCGCAAGTGTTTTTACATCTGCTGAATTCAAATCACCATCAAATGAAGAAGCTAGGCTAGAGGCGGATTCGGCTTCTGATGAAAAACCTGTTATGAAACTTGCAATTCTCACCAATGAAATAGTTTCTGCTAAAGAAAGCATCGCAGAAGAATCGTCTCGTCAAACTCTTAAACTTTTTGGGATGACTCTACTTGTAACAGATACTTGCAGAACATCTTCTCCGACAATGGCATGCAAACCAACACCTATTAACATAGTGGAAGGAAAATTGGAACTTCTAGGCCATAGTTCACTATGTGAAAAATCAGCTATATCAAAGCTAAGAGTAACAGTGAGACATGAAACTTGTGGTAAAGGGTTTGTGCCATATAAAAGCGAAGATGCGAGAAATAGACATCATCATCATCGAACGCGTACCTAA 1077 0.4002 MEWESEMEIRVHMDQDGLTCFSVRPSNSIGNGVSLNTGSHSVTHIQLNDHLSCANDYALKIRKPYTITKQREKWTGEDHKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDKSEYTTKTKGSIEIPPPRPKRKPAHPYPRKLVERTGSEGISILKKAMDSISLKTSDFDQENQSPKSIISIPGSESLGSFDSDTPNASLSPISSISCVCASVFTSAEFKSPSNEEARLEADSASDEKPVMKLAILTNEIVSAKESIAEESSRQTLKLFGMTLLVTDTCRTSSPTMACKPTPINIVEGKLELLGHSSLCEKSAISKLRVTVRHETCGKGFVPYKSEDARNRHHHHRTRT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00723 358 MobiDBLite consensus disorder prediction 135 152 - -
Trre5g00723 358 PANTHER SWI/SNF COMPLEX-RELATED 50 290 - -
Trre5g00723 358 Pfam Myb-like DNA-binding domain 72 113 IPR001005 -
Trre5g00723 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 69 117 IPR006447 GO:0003677
Trre5g00723 358 CDD SANT 73 115 IPR001005 -
Trre5g00723 358 MobiDBLite consensus disorder prediction 126 152 - -
Trre5g00723 358 FunFam protein REVEILLE 6 isoform X1 73 120 - -
Trre5g00723 358 MobiDBLite consensus disorder prediction 175 195 - -
Trre5g00723 358 SMART sant 70 117 IPR001005 -
Trre5g00723 358 Gene3D - 73 118 - -
Trre5g00723 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 119 IPR017930 -
Trre5g00723 358 SUPERFAMILY Homeodomain-like 65 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00723 Trre-Chr5 4978510 4982541 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g00723 Myb_DNA-binding 7.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00723 - - psat:127084287 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00723 5 4978510 4982541 Trre5g00723 5 4978510 4982541 ECH