Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00722 ATGTCAATCTCAATTTACATTATTACCCTCCAACTAACTTTTCTATTTTCATCATCTACTTCTCATTATTCTTCTCCATCACCACCAGCCACACCATTCTCCGAATCTTCTCCAGAACCTCCCTCCTCCACCGTCTCCGATTGGCTCTCCGCTCACGCCACATACTACTCCGCCACCGATGACACCAGAGATGCAGTAGACGGAGCGTGCGGCTACGGAGACACTCATAGGGACGGTTATGGTATCGCGGCATCAGCTGCTCTGAGTGAAACTCTTTTCGTGCGTGGTCAGATCTGTGGCGCGTGCTTTGAGCTTCGATGTCTTGAGGAGGATGTTCCTTTTGATCGGCGGTGGTGTGTCTCCGGTAAGTCGATTGTTGTGACTGCTACTAATTTCTGTGCTCCGAATTATGGTTTTGATGCGGAGAATGAAGGTGGACATTGTAATCCTCCTAAGCAGCATTTTGTTCTTCCGGTTGAAGCTTTTGAGAAGATTGCTATCTGGAAAGGGGGTAACATGCCGGTGAAGTATCGCAGGATAAAGTGCATAAGGGAAGGTGGAATGCGGTTTACAATTACTGGTTCTGGCATCTTCAATTCAGTGCTGATCAGTAATGTGGCTGGCATAGGAGACATTGTTGGTGTCAAAGTTAAAGGTTCAAGAACTGGTTGGATTTCTATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCTTTGCTACAAAACCAACCTCTTTCATTTGAGGTTACTAGTAGTGATGGAGTAACCATTACATCTTACAATGTAGCTCCCAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAATCTTAG 846 0.4563 MSISIYIITLQLTFLFSSSTSHYSSPSPPATPFSESSPEPPSSTVSDWLSAHATYYSATDDTRDAVDGACGYGDTHRDGYGIAASAALSETLFVRGQICGACFELRCLEEDVPFDRRWCVSGKSIVVTATNFCAPNYGFDAENEGGHCNPPKQHFVLPVEAFEKIAIWKGGNMPVKYRRIKCIREGGMRFTITGSGIFNSVLISNVAGIGDIVGVKVKGSRTGWISMGRNWGQNWHVNALLQNQPLSFEVTSSDGVTITSYNVAPKNWTFGQTFEGKQFES 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00722 281 PRINTS Expansin/Lol pI family signature 170 186 IPR007118 GO:0005576
Trre5g00722 281 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Trre5g00722 281 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Trre5g00722 281 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Trre5g00722 281 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Trre5g00722 281 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Trre5g00722 281 SUPERFAMILY Barwin-like endoglucanases 43 205 IPR036908 -
Trre5g00722 281 PRINTS Expansin signature 145 162 IPR002963 GO:0009664
Trre5g00722 281 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Trre5g00722 281 PRINTS Expansin signature 162 175 IPR002963 GO:0009664
Trre5g00722 281 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Trre5g00722 281 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Trre5g00722 281 PRINTS Expansin signature 186 198 IPR002963 GO:0009664
Trre5g00722 281 PRINTS Expansin signature 262 278 IPR002963 GO:0009664
Trre5g00722 281 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 187 IPR007112 -
Trre5g00722 281 SUPERFAMILY PHL pollen allergen 184 276 IPR036749 -
Trre5g00722 281 Gene3D - 188 279 IPR036749 -
Trre5g00722 281 Pfam Expansin C-terminal domain 188 265 IPR007117 -
Trre5g00722 281 SMART dpbb_1 85 177 IPR007112 -
Trre5g00722 281 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 197 276 IPR007117 -
Trre5g00722 281 Gene3D - 32 182 IPR036908 -
Trre5g00722 281 Pfam Lytic transglycolase 86 177 IPR009009 -
Trre5g00722 281 CDD DPBB_EXPA_N 47 182 - -
Trre5g00722 281 PANTHER EXPANSIN-A15 28 279 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00722 Trre-Chr5 4972971 4975892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00722 47 281 Expansin Gene Family AT3G03220 71.489 2.67e-123 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00722 - - tpra:123916217 516.924