Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00720 ATGACAATGGAAGAACATCAAGAAGTTTCCTTGCCAGGAACAGTTCCTTTTGATAGAGCTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAGTCGAGGAAAGCCGAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATCTGGTGCTCAGGACAGCAGGAAAAACATTTGCGGTTGAGCGGAGTTACAAAAATTGTTCAAGGACAAGGAAATATAAAGTCTCAGAGACAAAACGAAACCGAAAAGGAATGCCATTCATTTTCACTGATCTATGCTAATGGTGAACACACTCTTGATCTGATATGCAAGGATAAAGCACAAGCTGCTACTTGGTTTGTTGGCTTAAAAGCTGTGATTTCAAGGTGTCAGCAACCGAAAGCTTTTAATAGTTTAAGAAGCTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCCGCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTCTAGATGATACCTGTCAATTTACTCAGGTACATAGCGTATGTGCGAGTCCAACTCTGTCACTTCAAGAAAGGTGTTTTTCTGATGGCATGTCGTATACATCTGATAACTTTTATTCACCGGCATCATCCCTCTCCAGCACTCAATGCAGAACAGATAGTTCAGTCCCAAGTTCTCCATATATTAATCCAGCTATTCTTAGCAATACTAATACATCTCGTTTCGAAAAGGAGTACAAGAAGAATTTGTGGTCATATAGATCTATCATTTCTCCTACAACCTCCTCACATGTAGGAAATAGCAATAACAATGTATTGAAGGATGTAATGATATGGGGTGGTGGAATTGGTTGCCTTGTAGGGATTGTGAATGAAAGATTTGTCCAAAATAGTATTTATTCTTTAGTGCCAAAGTTACTCGAATCGACCGTGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAACCATGCTGCAATAGCTACAAAACAAGGCGAAGTTTATTGTTGGGGTCAAGGGAAGAGGGGAAGGTTAGGGCTAAAAATTGATATGGACATTAGCACCCCCAAAATAGTTGATTCTCTTAGTGATATTCGTGTAAAAAACGTTGCCTGTGGCGAGTATCACACATGTGCTTTGACGGATTCGGGTGAAGTATATGCGTGGGGGAACGACGTTTCTTGTTCGGAATCGGTTGATGAAGGGAGATTTAGGAGTCAGTGGTTAACACATAAACTTTCTTTACCTGTAGAGGGTATTAGTATTTCAAGTGTTGCTTGTGGAGAATGGCATACCGCAATTGTTTCCAGCTGCGGTCGGTTATTTACATACGGAGATGGTACATTTGGAGTGCTTGGACATGGGAATTATCATAGCTTTTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTTTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACGGCCGCAATTATCGAAGTCATTGCTGACCGTTTTAAGTACAATACGTCTACCGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGCGAGGCTTGGTCATACCGATAACGGAAACAAGCTTGTACCAACATGTGTTTCACAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTCTCGCACTTACTAATATGGGGAAAGTTTTTGCTATTGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTCTGGTTGAAGGTATGCTTAAACAAGAGTATGTGAAAATGATATCTTGTGGTTCATATCATGCTGCTGTTTTGACGTCTTCAGGAAGTGTCTACACATGGGGCAAAGGTGAAAACGGACAACTTGGGCTAGGCGATACCGAAAACCGATACACACCTTGTTTTGTTGAGGCACTAAGAGATAGGCAGGTAGATTCAATAACTTGTGGTCCAAGTTTCACAGTTGCGGTATGTTTGCATAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTAGCATTTGGTTTCACAAGGAAGAAACATAACTGTTATAACTGCGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTACCGATGCGTCTCTAGCCCCGGATAAGAGCAAGGCGTTTCGTGTTTGTGATTCGTGCTTTGATAGAAAGCAAGGAAGTAGTAGTAGTAGTACACTTTCAGTTTTGGAATCGTTTAACTCTAGAAATTGTAACAATAAGCAGATACAAAAGCATCATCAGAATAAAATTGGTGATTTCACCGAAGATAGAGGCGAAACAAATGTGACAAATGGTCCTTTATTGTCTGTTAGTCAATCGTGTTACCGGAAAAGCATGCCTAGTGGAAGGAAGGTTTGGAAAAACCAACAAGAAAGCCAACACGATTTAGAAGACAGTTCTTCTATGTTAGGTACTGTGCCACAATGTGGACAAGTTCCATGTTCAGCACAATTTGGAATCAATTGTACAGAAAATTCAGTTGTACACGAGACAGATACGTCAAAGTCTGATAAGTTGCTCATAGAAGAAGTTCAAAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTTAAGGACAATGAAATACTAGAGTGTCAACAAAAAGTTCAGGAGAGTTGGTCTGTGGCAAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGATGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTATCAGGAAAAGATAATCATGGACTAGAACAAAAGGCTGGTGGATTACAAGAATTTCTTCCAAATTTGGCACCAATACAAACAGATATGAATAGTCCAAGAAATGCCAATATGGATAGTTTATCAAATTCTCCTATAATATTCTCTAGTGCATTAAAGTCCAAATTTGGGAGAAGTATCCTTCTCAAAAATGACAAGTTGACGCCGAAGACTACCACTAAAGCAGAAGCTCAACAAAACACTGCAGATGGCTTGAAGACGGTTGAATGGGTAGAACAGTATGAGAATGGTGTTTACATAACACTGACAATCTCACCGAGTGGAGAAAAAGGAGTTAAGCGCGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAAGTGGTGGGAAGAGAATCAAACAAAAGTGTATCATAAGTATGAAATTGAAGAAATTTAA 3162 0.3997 MTMEEHQEVSLPGTVPFDRALEQAIVSIKKGAYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGQGNIKSQRQNETEKECHSFSLIYANGEHTLDLICKDKAQAATWFVGLKAVISRCQQPKAFNSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTCQFTQVHSVCASPTLSLQERCFSDGMSYTSDNFYSPASSLSSTQCRTDSSVPSSPYINPAILSNTNTSRFEKEYKKNLWSYRSIISPTTSSHVGNSNNNVLKDVMIWGGGIGCLVGIVNERFVQNSIYSLVPKLLESTVMLDVQNIALGGNHAAIATKQGEVYCWGQGKRGRLGLKIDMDISTPKIVDSLSDIRVKNVACGEYHTCALTDSGEVYAWGNDVSCSESVDEGRFRSQWLTHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGDEARLGHTDNGNKLVPTCVSQLVDYDFVQVSCGRMLTLALTNMGKVFAIGSAKYGQLGNPHVKDRAVLVEGMLKQEYVKMISCGSYHAAVLTSSGSVYTWGKGENGQLGLGDTENRYTPCFVEALRDRQVDSITCGPSFTVAVCLHKPISISDQSSCSGCRLAFGFTRKKHNCYNCGLLFCRACSSKKVTDASLAPDKSKAFRVCDSCFDRKQGSSSSSTLSVLESFNSRNCNNKQIQKHHQNKIGDFTEDRGETNVTNGPLLSVSQSCYRKSMPSGRKVWKNQQESQHDLEDSSSMLGTVPQCGQVPCSAQFGINCTENSVVHETDTSKSDKLLIEEVQRLRAEAKRLEKQCELKDNEILECQQKVQESWSVAKEEAAKCKAAKDVIKALALRLHTLSGKDNHGLEQKAGGLQEFLPNLAPIQTDMNSPRNANMDSLSNSPIIFSSALKSKFGRSILLKNDKLTPKTTTKAEAQQNTADGLKTVEWVEQYENGVYITLTISPSGEKGVKRVRFSRKRFSQKEAEKWWEENQTKVYHKYEIEEI 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00720 1053 CDD PH_PLC_plant-like 19 131 - -
Trre5g00720 1053 SMART fyve_4 654 723 IPR000306 GO:0046872
Trre5g00720 1053 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 382 IPR000408 -
Trre5g00720 1053 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 438 489 IPR000408 -
Trre5g00720 1053 Pfam FYVE zinc finger 662 720 IPR000306 GO:0046872
Trre5g00720 1053 ProSiteProfiles BRX domain profile. 994 1049 IPR013591 -
Trre5g00720 1053 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 476 486 IPR000408 -
Trre5g00720 1053 SUPERFAMILY PH domain-like 21 130 - -
Trre5g00720 1053 Pfam Transcription factor regulating root and shoot growth via Pin3 995 1048 IPR013591 -
Trre5g00720 1053 Coils Coil 841 875 - -
Trre5g00720 1053 Gene3D - 20 138 IPR011993 -
Trre5g00720 1053 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Trre5g00720 1053 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 590 600 IPR000408 -
Trre5g00720 1053 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 65 905 - -
Trre5g00720 1053 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Trre5g00720 1053 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 731 IPR013083 -
Trre5g00720 1053 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 660 722 IPR017455 -
Trre5g00720 1053 Pfam Regulator of chromosome condensation (RCC1) repeat 553 600 IPR000408 -
Trre5g00720 1053 Pfam Regulator of chromosome condensation (RCC1) repeat 501 549 IPR000408 -
Trre5g00720 1053 Pfam Regulator of chromosome condensation (RCC1) repeat 438 486 IPR000408 -
Trre5g00720 1053 Pfam Regulator of chromosome condensation (RCC1) repeat 331 379 IPR000408 -
Trre5g00720 1053 Pfam Regulator of chromosome condensation (RCC1) repeat 603 652 IPR000408 -
Trre5g00720 1053 CDD FYVE_like_SF 665 718 - -
Trre5g00720 1053 PRINTS Chromosome condensation regulator RCC1 signature 599 620 IPR000408 -
Trre5g00720 1053 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Trre5g00720 1053 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Trre5g00720 1053 PRINTS Chromosome condensation regulator RCC1 signature 383 399 IPR000408 -
Trre5g00720 1053 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Trre5g00720 1053 PRINTS Chromosome condensation regulator RCC1 signature 314 327 IPR000408 -
Trre5g00720 1053 PRINTS Chromosome condensation regulator RCC1 signature 440 454 IPR000408 -
Trre5g00720 1053 SUPERFAMILY FYVE/PHD zinc finger 661 731 IPR011011 -
Trre5g00720 1053 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 437 IPR000408 -
Trre5g00720 1053 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Trre5g00720 1053 SUPERFAMILY RCC1/BLIP-II 274 656 IPR009091 -
Trre5g00720 1053 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 603 IPR000408 -
Trre5g00720 1053 Gene3D - 402 578 IPR009091 -
Trre5g00720 1053 Gene3D - 579 656 IPR009091 -
Trre5g00720 1053 Gene3D - 234 395 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00720 Trre-Chr5 4935312 4941211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00720 989 1053 Major Intrinsic Protein MIP AT1G31880 41.538 9.51e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00720 - - gmx:100794953 1593.56