Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00715 ATGGTTCTCTCAAAGACATCCTCCGAATCTGATGTCTCTGTTCATTCAACCTTTGCTTCTCGCTATGTTAGAACTTCACTTCCCAGATTCAAGATGCCGGAGGAGTCGATACCGAAGGAGGCGGCATACCAAATAATAAACGATGAATTGATGTTGGATGGAAATCCTAGATTGAATCTAGCATCCTTTGTGACTACTTGGATGGAGCCTGAGTGTGATAAGCTTATTATGGCTTCCATCAACAAGAACTATGTTGACATGGATGAATACCCTGTCACCACTGAACTTCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTGAAGAAAATGAGGCTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAAGCTATAATGTTAGCTGGATTAGCATTCAAAAGAAAGTGGCAGAACAAAAGGAAACAAGAGGGAAAGCCTTTTGACAAACCCAACATTGTCACCGGAGCCAATGTCCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAATTGAAAGAGGTGAAACTAAGTGAAGGATACTATGTAATGGACCCTAAAAAAGCTGTAGACTTGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTTAAAACCCTAAATGATCTCCTAGTTGAAAAGAATAAGGAAACCGGATGGGACACTCCTATTCATGTCGATGCAGCTAGTGGCGGCTTCATTGCCCCGTTTATTTATCCGGAGCTCGAGTGGGATTTTCGCTTACCGCTAGTGAAGAGCATCAACGTTAGTGGTCACAAATATGGTCTTGTCTATGCTGGAATCGGTTGGGCTGTTTGGAGAAGCAAGGAAGACTTGCCTGAGGAACTCATTTTTCACATCAACTATCTAGGAGCTGATCAACCTACCTTTACCCTCAATTTTTCTAAAGGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGGTATAAAAATGTGATGGAAAATTGTAGAGACAACATGATAGTATTGAAAGAGGGACTCGAGAAAATGGGACGATTTAACATTGTGTCGAAAGACAATGGTGTTCCTTTGGTGGCTTTCACATTGAAGGACCACACAAACTTTGATGAATTCCAAATCTCTGACTTGTTGAGGCGCTTCGGATGGATCGTTCCGGCATACAGCATGCCCCCGGATGCACAACACATAACCGTTTTACGTGTTGTCATAAGGGAAGATTTCTCGAGGACTTTAGCGGAGCGCCTTGTGGCTGATGTCGAGAAAGTGTTACACGAGCTTGATACACTTGCGGCGAGGATAAGGATGATAAGTAGCTCCAGTAATGTTACAGTTACTGAAGAAGTTGTGAAAAATAATGGTCAAGTTGTGGCTACTAAAAAGAGTGCTTTGGAGACTCAGAGAGAAATCACTGCTGTTTGGAAGAAGTTTGTGTTGGACAGGAAGAAGCTGAATGATAAGATGAATGGTGTTTGCTAG 1530 0.4255 MVLSKTSSESDVSVHSTFASRYVRTSLPRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEENEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKQEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPKKAVDLVDENTICVAAILGSTLNGEFEDVKTLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWAVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMIVLKEGLEKMGRFNIVSKDNGVPLVAFTLKDHTNFDEFQISDLLRRFGWIVPAYSMPPDAQHITVLRVVIREDFSRTLAERLVADVEKVLHELDTLAARIRMISSSSNVTVTEEVVKNNGQVVATKKSALETQREITAVWKKFVLDRKKLNDKMNGVC 509
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00715 509 Gene3D - 1 65 - -
Trre5g00715 509 FunFam Glutamate decarboxylase 66 360 - -
Trre5g00715 509 CDD DOPA_deC_like 59 439 - -
Trre5g00715 509 Gene3D - 66 360 IPR015421 GO:0003824
Trre5g00715 509 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre5g00715 509 FunFam Glutamate decarboxylase 361 448 - -
Trre5g00715 509 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre5g00715 509 FunFam Glutamate decarboxylase 1 65 - -
Trre5g00715 509 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre5g00715 509 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Trre5g00715 509 Gene3D - 361 447 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre5g00715 Trre-Chr5 4880127 4887580 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00715 1 509 Calmodulin-binding Proteins AT5G17330 83.757 0.0 890
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00715 K01580 - gmx:100796533 934.48
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00715 5 4880127 4887580 Trre5g00715 5 4880127 4887580 ECH