Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00708 ATGCCCTTGGAAGGGATTTTCATTGAACCAACTTCAACACCACCTGATCTTTCTCTTCATATAAGTCCACCAAGCACTTCTTCTTCTTTGATTTGCAACAATAACTCAACTCATCAAATACTTAATTATGAAGCTCACAATTCTTCAAGGACTTTGGCTCAGGCTCAGGCTCAGGCTCAGACTCAGGCTCACACTGAACTATCTCTTGGAAGAAATTTTAGTGGTGGTGTTGGTGGTTGTGGAGCTCAAGAACAACCGCAACGACCACCGCAACAACAACCACATAACCCTTACTTTCCTCACCTCCAATATCACCACAACTCTACAACTTCAACAACAACACCAACAAGTACAAGTCCTAATTCAACTCACATGAATCACATAAATTATGGTGTTTCATTGCTTGATGTGTCATCATCGTCATCAGAAGCTTTGAGACCGATTAAAGGGATTCCGGTGTATCATAACCGATCATTCCCTTTTTTACCGGCCATGGAACATTCAAGAGAAAAAGATCCCAAGATGTGTTTATATCACCACATGCCTAATTCGCCAACACCGACTCCTTCTTCATCTTCTTCTCCACTTTCTCCCTACATCACTGCAGGAGGTTTAGATCCCATGTCGTTTTTAAACTCTAGTGGCTCTACAGCGGCTTATAGAGCCGCCGTAGCCACAAGGTTTAATAACGAACCTTTCAAATCTCATCAATATCCATTGCACCATCATCATCATCATCACCATCACTCACACTATGGTAGTGTTGGACTTGGAGGCTCAGAAGCATCTATGATGAGATCAAGGTTTTTGCCAAAGCTTCCAACAAAGAGAAGCATGAGAGCTCCAAGAATGCGATGGACGAGTACTCTCCATGCTCGATTCGTTCATGCTGTTGAGCTCCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTATTGGAACTAATGGATGTGAAAGATCTCACATTAGCTCATGTAAAAAGTCATTTGCAGATGTATCGAACTGTTAAGACAACTGACAAACCTGCAGCTTCTTCAGGCTTTTCAGATGGATCTGGAGAAGATGATGTTCCTCAAATTGGAAGCAATGGTGGAATTAGACAATTTTCAGACCAAAGAGGGTTAACAGATCGGCCATTACAACAAGATATGGATTACTCTTCCACCAACACATTATGGAGTAACTCTTCAAGTAGTAGAGAACCATGGCCACCAACTAGCTCTAACGACATAGATGGTTTCAGACCAACTATCTTCCAATCACAACCAATATCAGGAGGTCATCAAATTCAGGAATGTGATTCAAATCAACTAAAGAACACTTTGTCAGGATCTAATTTAGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGCATACCAGATTGGAATGGCAAAGGACAAGCCTAA 1410 0.4199 MPLEGIFIEPTSTPPDLSLHISPPSTSSSLICNNNSTHQILNYEAHNSSRTLAQAQAQAQTQAHTELSLGRNFSGGVGGCGAQEQPQRPPQQQPHNPYFPHLQYHHNSTTSTTTPTSTSPNSTHMNHINYGVSLLDVSSSSSEALRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSPTPTPSSSSSPLSPYITAGGLDPMSFLNSSGSTAAYRAAVATRFNNEPFKSHQYPLHHHHHHHHHSHYGSVGLGGSEASMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGFSDGSGEDDVPQIGSNGGIRQFSDQRGLTDRPLQQDMDYSSTNTLWSNSSSSREPWPPTSSNDIDGFRPTIFQSQPISGGHQIQECDSNQLKNTLSGSNLECKNPSLEFTLGIPDWNGKGQA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00708 469 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 15 466 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre5g00708 469 FunFam Myb family transcription factor 280 338 - -
Trre5g00708 469 SUPERFAMILY Homeodomain-like 279 335 IPR009057 -
Trre5g00708 469 MobiDBLite consensus disorder prediction 62 121 - -
Trre5g00708 469 MobiDBLite consensus disorder prediction 337 417 - -
Trre5g00708 469 Gene3D - 281 338 - -
Trre5g00708 469 MobiDBLite consensus disorder prediction 363 417 - -
Trre5g00708 469 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 335 IPR006447 GO:0003677
Trre5g00708 469 MobiDBLite consensus disorder prediction 102 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00708 Trre-Chr5 4800162 4805916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00708 105 466 G2-like Transcription Factor Family AT5G16560 45.431 4.24e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre5g00708 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00708 - - ccaj:109796302 596.66