Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00690 ATGACTAGAAAAAAGGTGAAACTCGCATTCATAATCAATGATTCTGCGAGGAAGGCGACATTCAAGAAAAGGAAGAAAGGTCTAATGAAAAAGGTTAGTGAACTTAGCACTCTTTGTGGTATTGATGCTTGTGCTATAATTTATAGTCCATACGATCCTCAGCCAGAGGTTTGGCCATCTCCATTAGGAGTCCAAAGGGTACTTTCGAAGTTTCGAAGAATGCCTGAATTGGAACAAAGCAAAAAGATGGTGAATCAGGAGAGTTTCTTAAGGCAGAGAATTCAAAAGGCGAAAGATCAATTAACAAAACAAAGAAAGGATAATAGAGAAAAGGAAATGACCCAATTAATGTTTCAATATCTTAGTGCTGATAAAATTATGCCCAATATAAGTATGGTTGATTTGAATGATATGGCATGGTTGATTGATCAATATTTAAAGGACATCAATAGAAGGGTTGAATCATTGACCAAGAATGGTCAAGGTCAACCTCAAATGGTAGCACCAACAATGGTGACTAATAATGGTGTGGCTAAGATTGAAGATAATGGACAAGGGAGTAGTAGTAATGGACATGGTAATCAGGTTTTGGATATGAACATGGATGTTATGCAAAAACAACATTGGTTTATGAATTTGATGAATCATGGTAGTGGTGGTGGTGATGAGGCAACTCCTTTGGGTGATGTTAATCACCAAAATGGCTTTTGGCAAAACCAATTTTTCCATTGA 732 0.3675 MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSPLGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIQKAKDQLTKQRKDNREKEMTQLMFQYLSADKIMPNISMVDLNDMAWLIDQYLKDINRRVESLTKNGQGQPQMVAPTMVTNNGVAKIEDNGQGSSSNGHGNQVLDMNMDVMQKQHWFMNLMNHGSGGGDEATPLGDVNHQNGFWQNQFFH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00690 243 PANTHER MADS BOX PROTEIN 3 127 - -
Trre5g00690 243 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Trre5g00690 243 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Trre5g00690 243 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g00690 243 Coils Coil 87 114 - -
Trre5g00690 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Trre5g00690 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g00690 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g00690 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g00690 243 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre5g00690 243 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00690 Trre-Chr5 4712529 4713260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00690 1 216 Type I MADS-box Gene Family AT5G48670 50.584 9.38e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g00690 SRF-TF 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00690 - - gmx:100813231 389.423