Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00683 ATGTCGCGCGAGAAGCTAGCTGGCTTGTCTCTCGATGACATCTTAGCCAATCAAAAAAGAGCCGGCTCTGCACCACCAAGCCAACCACCACCCCCTAAAAGCCGAACCCTCTTAGATATCATTAAAGAAGACGAAACCAACAAAAAAGATCGCAGATCTTGGAAAGCCTTCAAGGATAAGCTTCGGCTCAAGCGCGCGGGCTCTGCTTGGACATCATCAATTCACATTCCAACATCAGATATTCCAATCCAAAATCCAAACAGCAGAATCTTTTCCCAATTCGGTCGTCGTGACTCAGTTCGAGTGCAAACTCACCAAGACTCAGACATGTCATCTCCGGCCATGACTCACCAAGTGGAAGACCTCGATCCGTCAAATGAATCCAATCCACCAATTTCTAAACCACAATTTACTCGCAAGAGCTCAACCCGTATAACAGTAGATTCCCCTGAGCATTCGGCCAGTGGAAGAAATCTTCGACAGCTCTCACGCACGAATTCCTCCAGTGTATCATCGGAGCCATTTCGAAGAGAGCGTGTGGTGACTTTCCGAGATAGCTTCGACGATGACGAGCCTGGCGATGATAATCACCTGGAGACGGGCAGGGCATTATCAGCGAGGGAAGCGGTGGCGGCGCAGGAGGCAGCAGAAGCTGCGGCAGAGGAGGCTGCAGCGGGACCTCCAACGATGTCGTTGATGGATTTGTTAGGGGAGACGGATAGAGAATTGGGGTTGGAAGGGTCAAGGTATATATTGAGTGATGAAGATGAAGATGATGATTATTATGATGATGAAGAAGATGATGAAGATGGAGAAAATGCTTTGGAACACACTTGCTGTATTTGTATGGTGAAGCATAAGGGTGCTGCTTTGGCAGCTTGTGGTCATAGTTTCTGTAGGATGTGTTCAAGGGAGCTTATGGTTGCTAAGGGAAATTGTCCACTTTGTAATAATTTCATTTTAGAGATTCTTGACATTTTTTGA 984 0.4705 MSREKLAGLSLDDILANQKRAGSAPPSQPPPPKSRTLLDIIKEDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPIQNPNSRIFSQFGRRDSVRVQTHQDSDMSSPAMTHQVEDLDPSNESNPPISKPQFTRKSSTRITVDSPEHSASGRNLRQLSRTNSSSVSSEPFRRERVVTFRDSFDDDEPGDDNHLETGRALSAREAVAAQEAAEAAAEEAAAGPPTMSLMDLLGETDRELGLEGSRYILSDEDEDDDYYDDEEDDEDGENALEHTCCICMVKHKGAALAACGHSFCRMCSRELMVAKGNCPLCNNFILEILDIF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00683 327 ProSiteProfiles Zinc finger RING-type profile. 279 317 IPR001841 -
Trre5g00683 327 MobiDBLite consensus disorder prediction 98 175 - -
Trre5g00683 327 SUPERFAMILY RING/U-box 278 323 - -
Trre5g00683 327 SMART ring_2 279 316 IPR001841 -
Trre5g00683 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 327 IPR013083 -
Trre5g00683 327 MobiDBLite consensus disorder prediction 37 51 - -
Trre5g00683 327 PANTHER OS01G0917900 PROTEIN 2 327 - -
Trre5g00683 327 Pfam Zinc finger, C3HC4 type (RING finger) 276 320 - -
Trre5g00683 327 MobiDBLite consensus disorder prediction 1 51 - -
Trre5g00683 327 MobiDBLite consensus disorder prediction 98 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00683 Trre-Chr5 4658259 4659930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00683 6 327 C3H Transcription Factor Family AT3G07120 35.989 9.45e-53 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00683 - - gmx:100795449 394.815