Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00682 ATGACCACTCGAATTGCGCCGGGTGTCGGTGCAAATCTGCTGGGCCAACACTCCGCCGAGAGAAACCAAGACGCTACTGCTTACGTCGGCAATCTCGACCCTCAGATATCTGAGGAATTATTGTGGGAGCTTTTTGTTCAAGCTGGTCCCGTAGTTAATGTGTATGTTCCTAAGGATAGAGTGACTAATCAACATCAAGGTTATGGATTTGTTGAATTTCGAAGTGAAGAAGATGCTGATTATGCTATTAAGGTGCTTAACATGATTAAACTTTACGGGAAACCAATTCGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTCGGGGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGACACGGGGAATTCCCGAGGCTTTGGCTTCATTAGCTATGATTCATTTGAAGCATCTGATTCAGCTATTGAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACCAAAGGCGAAAGGCACGGTACTCCCGCAGAAAGAGTTTTGGCTGCAAGTAACCCAACTGCACAGAAGAGCAGACCTCATACTTTATTTGCTAGTGGGCCACCAACACTTCCCAATGCCCCTCAAGCTAATGGTACCATTGCTGCTCCAGCGCCTCCTCGTCCCTTTTCTAATGGTGTTGCCCCACCTATTCCTGTCATCCATCCACCACCTCCTCAAGCAGCAGCGTTTCAGCCTATGCAGATGCCACCACCTGGACAACAACAATGGCATCAACAGCAGCCAGGTCAACAAATGATGCCACCACAGGGAATGCCTCCCCCTCAAATGCAGCAGTTCAGGCCACCTCACTCAATGCAGATGCCACCACCACCACCTCCACAAGGTATGCAGGGTCCTCCAAGACCTCTTCCACCACCATCAGTAATGGCAGGCCAGCAACAAGTTTGGCGACCCCCGCCACCACCTCAGCAACAGGGTGGACATCCTATGGGATATCCTCAGAATTCAATGCCACCGCCACCACCTCCCAATCACCATGGAATGCGACCACCTTCAGGTTAA 1143 0.4786 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNAPQANGTIAAPAPPRPFSNGVAPPIPVIHPPPPQAAAFQPMQMPPPGQQQWHQQQPGQQMMPPQGMPPPQMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPPSG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00682 380 CDD RRM1_SF3B4 28 100 IPR034158 -
Trre5g00682 380 MobiDBLite consensus disorder prediction 342 380 - -
Trre5g00682 380 CDD RRM2_SF3B4 111 193 IPR034159 -
Trre5g00682 380 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 371 - -
Trre5g00682 380 MobiDBLite consensus disorder prediction 275 292 - -
Trre5g00682 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Trre5g00682 380 MobiDBLite consensus disorder prediction 293 334 - -
Trre5g00682 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Trre5g00682 380 MobiDBLite consensus disorder prediction 208 236 - -
Trre5g00682 380 SMART rrm1_1 113 187 IPR000504 GO:0003723
Trre5g00682 380 SMART rrm1_1 26 99 IPR000504 GO:0003723
Trre5g00682 380 FunFam splicing factor 3B subunit 4 109 200 - -
Trre5g00682 380 MobiDBLite consensus disorder prediction 193 380 - -
Trre5g00682 380 FunFam Splicing factor 3b subunit 4 16 108 - -
Trre5g00682 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Trre5g00682 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Trre5g00682 380 Gene3D - 111 200 IPR012677 -
Trre5g00682 380 MobiDBLite consensus disorder prediction 248 272 - -
Trre5g00682 380 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Trre5g00682 380 Gene3D - 16 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00682 Trre-Chr5 4651457 4657425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00682 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 3.48e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00682 K12831 - gmx:100792707 519.235