Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00669 ATGTGGAAATTTAAGCCGTTCATGCACAAAGAGCATAGTGGTCTTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCATAAGGTCATTGCTGAAGGAGGGTTCTCATGTGTCTACTTGGCTCGTGATGCTGTACATATGTCGAAACAGTATGCTTTGAAGCATATAATATGCAATGATGACGAATCACTTGGGTTGGTGAAGAAGGAGATATCTGTGATGAAGTTGCTGATAGGACATCCCAATGTGGTCAAACTTCATGCTCATGCCATCTATGATATGGGTAGGACAAAAGAGGCATTCCTTGTAATGGAATTTTGTGAGAAGTCTCTGGTTAGTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTCTTCGCTATGCACTGCCAGTCCCCACCTATTGCTCACCGAGACTTGAAAGCAGAGAATCTGTTGTTAAGTTCAGATGGTTTGTGGAAGTTGTGTGATTTTGGAAGCATTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACCCCTGCCTACAGAGCTCCTGAGATGTGGGATCTGTTCCTGAAAGAAGTAATTAATGAGAAAGTGGACATATGGGCACTTGGCTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGTTCAACCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGATGACCGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAATTTAGGTGCTTCAATGTCTACACACAAATCAAGTCCAATGCCTCGCAGAAATGCACCTCCTCCTCCATCAGTTGGAGAACCCAAAACTACCCCTCAGCCATCTCTTGCTCCTAGGGGAGGGGATAGTGGGGGCCAGCTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAGGGAAAACCTATATATGATGAAGAACGATCTAGTCACCATATTTCATCGAAGCATGACAGAGTTCGTCCGGACAATGATCAGTTACCCAAAAATGTTGGTACTAAGAAAGTGGCTAACACACAAACTCAGACTGTAAAGAGCAACATACATGGAATGTTACACAAGCCTGATGCTGCATCTTCCAAGGACTTTGAAATTAATTTTTTCCCTGATACAGATCATGCAAGTCAGAGACATATGTCAAATCTGGAGAAGAAGAATGATAACTTCCAAGACCAGACTTTTAACACTTTTGTTGCAGAATTTGATACTACTAAGCTTAACTCCGGGCATGGTAATAAATCCACAAGGGAAGAAGCATTAGAGTCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGACGCTAACTTGGAGAAATCTGAAATAACTGCCAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAAAGGCAAGAACTGCAGGATCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGATTTCGAGAACCTCACCTGGAGTTGCGTCACCTGCGTCTTTGCAGGATAGAAGTGAATGGAAAACACCTAGTTCAGAACCAAAGTCATCATGGCAAGCATTCCCAGAGGCAACTGAATCGTTGAAATCCCTTTCAGCAGACAATGCATCAAAATCTGTTAGGTCAAGAAATGGTCAGCAAAACAAGCAGGCTACTCAACCAGCTTCTGATTTTGATTCTTGGGGTTTTGGCACAGATACATTTAGTGCTGCTCGTGCTGGTAGTGGTAGCCAACAGATGCCGAGACCTGGTGAAGTGAGTAAAGCTCATGTTTTTGGTGAGGCAAAGGGTTTTGAGAGCAAGTCAAATTCTCAACCTGCTGGATGGGCTGGTTTTTAA 2004 0.4316 MWKFKPFMHKEHSGLEGRSIDVGNLKINVHKVIAEGGFSCVYLARDAVHMSKQYALKHIICNDDESLGLVKKEISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVSVLESRGAGYFDEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLSSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLKEVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSTLTDLIRDMLQARPDDRPDITQASALLDWPFISINLGASMSTHKSSPMPRRNAPPPPSVGEPKTTPQPSLAPRGGDSGGQLGAFWSTMHAKDSLVPEEKGKPIYDEERSSHHISSKHDRVRPDNDQLPKNVGTKKVANTQTQTVKSNIHGMLHKPDAASSKDFEINFFPDTDHASQRHMSNLEKKNDNFQDQTFNTFVAEFDTTKLNSGHGNKSTREEALESEVEKLKEQLKDANLEKSEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNREISRTSPGVASPASLQDRSEWKTPSSEPKSSWQAFPEATESLKSLSADNASKSVRSRNGQQNKQATQPASDFDSWGFGTDTFSAARAGSGSQQMPRPGEVSKAHVFGEAKGFESKSNSQPAGWAGF 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00669 667 MobiDBLite consensus disorder prediction 537 618 - -
Trre5g00669 667 MobiDBLite consensus disorder prediction 315 329 - -
Trre5g00669 667 MobiDBLite consensus disorder prediction 532 667 - -
Trre5g00669 667 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 307 - -
Trre5g00669 667 PANTHER SERINE/THREONINE PROTEIN KINASE 1 644 - -
Trre5g00669 667 ProSiteProfiles Protein kinase domain profile. 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00669 667 MobiDBLite consensus disorder prediction 370 391 - -
Trre5g00669 667 SUPERFAMILY Protein kinase-like (PK-like) 28 298 IPR011009 -
Trre5g00669 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Trre5g00669 667 SMART serkin_6 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00669 667 Coils Coil 476 531 - -
Trre5g00669 667 CDD STKc_GAK_like 26 288 - -
Trre5g00669 667 Pfam Protein kinase domain 29 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00669 667 Gene3D Transferase(Phosphotransferase) domain 1 10 301 - -
Trre5g00669 667 MobiDBLite consensus disorder prediction 370 397 - -
Trre5g00669 667 MobiDBLite consensus disorder prediction 306 349 - -
Trre5g00669 667 MobiDBLite consensus disorder prediction 653 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00669 Trre-Chr5 4518584 4521582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00669 26 286 Miscellaneous Gene Families AT2G34180 30.627 2.15e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Trre5g00669 Pkinase 5.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00669 K08853 - gmx:100808507 969.533