Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00661 ATGGCTTCTCTACTTTCACAACCCAATTTCATTTCCTTAACAACTTACAACAACTTCAAACCCAAAACTACACTCTCTTCTTCCCTCCTCGTTGGAACTTCAACGACACGCCGTTTTAGGAGATACGTAACGGTTTCTGAACAAGCTACGGCGAATTCTCCTGCTGTTAGAAAACTCTATGTTGGGAACATTCCTCGTACTGTTAGTAATGATGAACTTGCTCAGATTGTTCAAGAACATGGTGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAAACCATCGAGGATGCAAATGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGCGAGATTAAAGTGAATATAACCGAAAAACCTTTAACCACGGGAAGTGTGTCACTCCAGGCTAGGGAGCCTGAATTTGTTGACAGTCCCTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCTGATACCCTTAAAAGTTTCTTTGAGAAAGGAAAAGCTCTTAGTGCCAAGGTTTCACGGATTCCTGGGACCTCAAAATCCAGTGGTTTCGGTTTTGTCACATTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAATGATGCTTTGTTAGAAGGTAAAAAAATCCGTGTGAATAAGGCGTAG 696 0.4167 MASLLSQPNFISLTTYNNFKPKTTLSSSLLVGTSTTRRFRRYVTVSEQATANSPAVRKLYVGNIPRTVSNDELAQIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTIEDANAAAEKLNGTQIGGREIKVNITEKPLTTGSVSLQAREPEFVDSPYKVYVGNLAKNVTSDTLKSFFEKGKALSAKVSRIPGTSKSSGFGFVTFSSDEDVEAAISSFNDALLEGKKIRVNKA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00661 231 SMART rrm1_1 157 229 IPR000504 GO:0003723
Trre5g00661 231 SMART rrm1_1 58 131 IPR000504 GO:0003723
Trre5g00661 231 Gene3D - 140 231 IPR012677 -
Trre5g00661 231 FunFam 30S ribosomal protein 2, chloroplastic 143 231 - -
Trre5g00661 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Trre5g00661 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 129 IPR000504 GO:0003723
Trre5g00661 231 SUPERFAMILY RNA-binding domain, RBD 150 231 IPR035979 GO:0003676
Trre5g00661 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 231 IPR000504 GO:0003723
Trre5g00661 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Trre5g00661 231 PANTHER OS02G0815200 PROTEIN 52 230 - -
Trre5g00661 231 CDD RRM1_PSRP2_like 58 137 - -
Trre5g00661 231 SUPERFAMILY RNA-binding domain, RBD 50 135 IPR035979 GO:0003676
Trre5g00661 231 Gene3D - 33 139 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00661 Trre-Chr5 4428831 4433523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00661 59 231 Eukaryotic Initiation Factors Gene Family AT3G16380 33.708 1.68e-17 79.0