Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00659 ATGGTTCGCTCCAATGGCATCAAGCTTCTTCGTTCTCTCCGTAACGCTGAAATATCCATATATGGAGGATTGCTTCAAAGGGGTTATAGAACATTGAATTCAAGATTTGGAAATCCTTCCAAAGTTATTGGAAATTCTTTTCCCAATGTTGGAGATGGTGTTAATTTGAAGAACAGGGTGCTATTGGGAGCAGCAAATAGTTATTTGGGGGCATCTAGATCAATTCATGGCTCGGCATCATTGGCACGAGATTTTTATGAAGTTCTTGGAGTTAGTAATAATGCAAGTTCTTCCGAAATAAAGAAAGCATACTACGGGCTTGCAAAAAAGCTCCACCCTGACACAAACAAAGATGATCCTGACGCTGAAAAGAAATTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGACGAGGAAAAGCGTCAACAGTATGATCAGGTTGGCCATGATAATTTTATAAACCAACAAACCGAAGGTTTTGGAGGAGGCGGTGGCTTTCATAATCCCTTTGAGGATTTATTCCGTCATGGTTTTGGCGACTTATTTAATCGGAACATTGGCGGACAGGATGTCCAGACTTCTGTTGAACTTTCTTTTATGGAAGCTGTCCAAGGATGCACCAAAACCGTTACATTTGAAACAGAGATGCTTTGTAACACTTGTGGTGGAAGCGGGGTTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGGTCAGGAGTGACATCTGTACAAGCTGGCATAATTGGGATGAGCGTTACATGTGGTGCATGTAGGGGAACTGGCAAAATTGTAAAGAGTTTCTGCAAGTCATGCAGGGGTGTAAAGCTTAACAAAGGAACAAAGTCGATCAAAGTGGATATTAAGGCTGGGATTGACAACAATGAAACCCTTAAGGTTTACAGAAGTGGTGGTGCAGATCCTGATGGAGATCGTCCTGGTGATCTTTATGTTACTATTAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTCATATTCATGTAGATACTGTTTTAAGTATCACTCAGGCAATTTTGGGCGGAACTATTCAGGTCCCGACTCTTACTGGGGATGTTGTTCTTAAGGTGCGTCCTGGAACACAACATGGTCAAAAGGTGGTTCTGAAAAACAAAGGGATCAAGGGCAAAAATTCTTATACATTAGGCAATCAATACGTTCATTTTAACGTCAGCATCCCAGTAAACCTAACACAAAGACAGCGGGAATTGATTGAAGAGTTTCAAAAGGAAGATCAAGAAGAATCTTCTGATAAAGACAAAGCTGCTTCGGCTTCCGGTTGA 1317 0.4169 MVRSNGIKLLRSLRNAEISIYGGLLQRGYRTLNSRFGNPSKVIGNSFPNVGDGVNLKNRVLLGAANSYLGASRSIHGSASLARDFYEVLGVSNNASSSEIKKAYYGLAKKLHPDTNKDDPDAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDNFINQQTEGFGGGGGFHNPFEDLFRHGFGDLFNRNIGGQDVQTSVELSFMEAVQGCTKTVTFETEMLCNTCGGSGVPPGTRPETCKRCKGSGVTSVQAGIIGMSVTCGACRGTGKIVKSFCKSCRGVKLNKGTKSIKVDIKAGIDNNETLKVYRSGGADPDGDRPGDLYVTIKVREDPVFRREGSHIHVDTVLSITQAILGGTIQVPTLTGDVVLKVRPGTQHGQKVVLKNKGIKGKNSYTLGNQYVHFNVSIPVNLTQRQRELIEEFQKEDQEESSDKDKAASASG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00659 438 SUPERFAMILY HSP40/DnaJ peptide-binding domain 330 416 IPR008971 GO:0006457|GO:0051082
Trre5g00659 438 Gene3D - 192 321 - -
Trre5g00659 438 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 206 280 IPR036410 -
Trre5g00659 438 ProSitePatterns Nt-dnaJ domain signature. 126 145 IPR018253 -
Trre5g00659 438 FunFam Molecular chaperone DnaJ 211 283 - -
Trre5g00659 438 FunFam Chaperone protein dnaJ 1, mitochondrial 326 432 - -
Trre5g00659 438 SMART dnaj_3 83 141 IPR001623 -
Trre5g00659 438 Gene3D - 219 279 - -
Trre5g00659 438 MobiDBLite consensus disorder prediction 418 438 - -
Trre5g00659 438 CDD DnaJ_C 190 408 - -
Trre5g00659 438 Gene3D DnaJ domain 81 191 IPR036869 -
Trre5g00659 438 Hamap Chaperone protein DnaJ [dnaJ]. 81 436 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre5g00659 438 PRINTS DnaJ domain signature 141 160 IPR001623 -
Trre5g00659 438 PRINTS DnaJ domain signature 86 104 IPR001623 -
Trre5g00659 438 PRINTS DnaJ domain signature 121 141 IPR001623 -
Trre5g00659 438 PRINTS DnaJ domain signature 104 119 IPR001623 -
Trre5g00659 438 Gene3D - 327 436 - -
Trre5g00659 438 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 66 427 - -
Trre5g00659 438 Pfam DnaJ domain 84 146 IPR001623 -
Trre5g00659 438 Pfam DnaJ central domain 219 278 IPR001305 GO:0031072|GO:0051082
Trre5g00659 438 FunFam Chaperone protein dnaJ GFA2, mitochondrial 81 191 - -
Trre5g00659 438 Pfam DnaJ C terminal domain 192 405 IPR002939 -
Trre5g00659 438 ProSiteProfiles Zinc finger CR-type profile. 206 284 IPR001305 GO:0031072|GO:0051082
Trre5g00659 438 ProSiteProfiles dnaJ domain profile. 84 149 IPR001623 -
Trre5g00659 438 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 326 IPR008971 GO:0006457|GO:0051082
Trre5g00659 438 SUPERFAMILY Chaperone J-domain 83 185 IPR036869 -
Trre5g00659 438 CDD DnaJ 84 138 IPR001623 -
Trre5g00659 438 CDD DnaJ_zf 219 279 IPR001305 GO:0031072|GO:0051082
Trre5g00659 438 MobiDBLite consensus disorder prediction 418 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00659 Trre-Chr5 4401207 4407978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00659 77 146 C2H2 Transcription Factor Family AT1G74250 41.333 2.02e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00659 K03686 - gmx:100815834 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00659 5 4401207 4407978 Trre5g00659 5 4401207 4407978 ECH