Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00657 ATGAGTAGCACTTCAAGTGGCGATGATGGCCGCAAAACGCCAAAGTGTATTCAGATGTCATTGTCAAGTGGGGATGATGATATTCGCAAAATGCTAAAGCGTAATCGGCCATCATCATCAAGCGGAGATGTTGGCTGCAGAAGGATAAAGCGTAGTCAGTCGTCATTATTAGGCGAAGAAGATGATCAAGGACGTAACGCGGAAGGAGAAGGCATATCTATTGGAGATGATGGTCACAAAACGCTAAAGCGTAGTTGGTCATCGTTATCAATCGAGGACGATAGTCACAAAATGCTAAAGCGTAATTGGCCATCATCATCAAGTGGGGATTATGACTCCAAACAGATAAAGCGTAGCGAGTCATCATTATCAGGTGAGGAAGATGATGATGATGAAGAAGATGATCAAGGAGGTAACTCGGGAGGAGCAGGAGAAGAAGGTAGTCTTAAGAAAGGTACATGGACAACAGAAGAGGATGAAATTTTGGTAGAACATGTTAAAAAATACGGATTGGGAAATTGGAATGCGGTGCGAAAGTATTCAGGACTTGCTCGCTGTGGGAAAAGTTGTCGTCTACGATGGGCTAATCATTTGAGACCAGAACTGAAAAAGGGTGAATTTACTGATGAAGAAAAAAAGAAAGTCCTTGAGCTCCACTTTTCGATGGGAAACAAATGGGCTCGAATGGCTGCATTGATGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTGCGACGAGTTGGCCTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGGTAAACAAGAAAATGCCGACACAAATGAAGCCGGCCAGTGTGATGAAACAGAAAACTTCATTATACCTGATGTGGAATTTAAAGATTACAAATTACACCCAGCTTTGTTACCACCGTGTTTTGATATTACTACCTTGATCAAGCGTCCCTCAAAGCGCGCTTGTGAGTCCAATATGATGTACAGTGATTTTGGCGGTTGTAGCAGTAGTGCTGCTGTCCAAGAAGTATTTGATCCGTACGGCAAATATCCTATGTTTTCTGCTCCATGTGATCCGATTCTTTACACCAACGCTCCATTTCATGGATATGAATCATATGATAACATTCCGGAAGCTCCATTTCATGGATATGAATCATATGATAACATTCCGGACGGTATTCACACCGTACCAAATGTCTCTTCGTCTGAGCCCATATACGGGTCCATGAGGTATGAGCTCCCTTCACTCCAATATTTACAGACTCAACAAGGTAGCTGGTCTGTGTCGCCACTTACTTCACTTGAGTCTGTCGAGACAATGATTCACTCTTCTCCTAATGAGCCTTATCATTCATCTCCGAATGAGCCGTATCAGTCAGTTCCAACTTCGCCAGATAGCAGTCATTTCGTTGATACAATATTACACTCCAATGATGATTCTTTTCAAGAGAAAATTGATAACACCGCGCCAAATGAAGCAGACAATAGTACACAGTGGAATGTACTAGATGATCATTCTGGTGCTTCATTTATGCCATCTGACTATAATACTCATCACATGCACATGTGGTCTATTGATCGATCTGACTTGGTCGAAACCACTCAAGATCATGGTAATTTGAATCAAACAGATTTTTCCTCAGATCCTATGCTTGAATCCGCTTGGTGCATGAAGAGTAAATGA 1695 0.4212 MSSTSSGDDGRKTPKCIQMSLSSGDDDIRKMLKRNRPSSSSGDVGCRRIKRSQSSLLGEEDDQGRNAEGEGISIGDDGHKTLKRSWSSLSIEDDSHKMLKRNWPSSSSGDYDSKQIKRSESSLSGEEDDDDEEDDQGGNSGGAGEEGSLKKGTWTTEEDEILVEHVKKYGLGNWNAVRKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKGKQENADTNEAGQCDETENFIIPDVEFKDYKLHPALLPPCFDITTLIKRPSKRACESNMMYSDFGGCSSSAAVQEVFDPYGKYPMFSAPCDPILYTNAPFHGYESYDNIPEAPFHGYESYDNIPDGIHTVPNVSSSEPIYGSMRYELPSLQYLQTQQGSWSVSPLTSLESVETMIHSSPNEPYHSSPNEPYQSVPTSPDSSHFVDTILHSNDDSFQEKIDNTAPNEADNSTQWNVLDDHSGASFMPSDYNTHHMHMWSIDRSDLVETTQDHGNLNQTDFSSDPMLESAWCMKSK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00657 564 CDD SANT 153 198 IPR001005 -
Trre5g00657 564 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g00657 564 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 128 560 - -
Trre5g00657 564 MobiDBLite consensus disorder prediction 125 139 - -
Trre5g00657 564 Gene3D - 148 204 - -
Trre5g00657 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 202 IPR017930 -
Trre5g00657 564 MobiDBLite consensus disorder prediction 53 100 - -
Trre5g00657 564 MobiDBLite consensus disorder prediction 446 470 - -
Trre5g00657 564 ProSiteProfiles Myb-like domain profile. 199 249 IPR001005 -
Trre5g00657 564 SMART sant 203 251 IPR001005 -
Trre5g00657 564 SMART sant 150 200 IPR001005 -
Trre5g00657 564 FunFam MYB-related transcription factor 150 203 - -
Trre5g00657 564 Gene3D - 206 252 - -
Trre5g00657 564 CDD SANT 206 247 IPR001005 -
Trre5g00657 564 ProSiteProfiles Myb-like domain profile. 146 198 IPR001005 -
Trre5g00657 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 253 IPR017930 -
Trre5g00657 564 MobiDBLite consensus disorder prediction 1 153 - -
Trre5g00657 564 Pfam Myb-like DNA-binding domain 204 247 IPR001005 -
Trre5g00657 564 Pfam Myb-like DNA-binding domain 151 198 IPR001005 -
Trre5g00657 564 SUPERFAMILY Homeodomain-like 149 245 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00657 Trre-Chr5 4396498 4398487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00657 119 449 MYB Transcription Factor Family AT5G06100 38.965 7.22e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g00657 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00657 K09422 - gmx:100800658 346.665