Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00654 ATGGATTCTTCAAGTATAATTCATTCCAAACAACACTATCATCAACAACATAATTCTGGACTACTTATGAGGTACAATTCAGCTCCAACTTCATTGCTTACAAGCCTTATTGACAACAACACTCAAAGCTATCTAAACAATGAAGAATCTTTTACAAGTGAAAGTTCAAGTTCAGAAATGGATACTATGTTGTCTAAGTTGATATCATCCAATAATGGATGGAACAATTCTGAAGAACCTTTGCAAGAGTTTGATGTGAAGCCTGTGAAGCAAGAAATAGGTGAATCTGTTCCACAAAATGGTGATTATTCTTATGGTGGATCTGATTTGATTTACCACGGCTTTTCAAATGGTTCTAGTAATGGATTTTATGGATCTTTTGGAGTAGTTAGCTCTAAAATTGGTGTAAGGAATTCTTCTTCCAATCTAATTAGGCAAAAGAGCTCACCTGCTGGATTTTACTCTAATGAAAATGTTGAAGGTCTTGCAACATTAAGAGAGTTAGGAAGCTTTAAAGCCAATGAAGTCTCAAATGGTACTCTTAACTTCTCATCTAGGCCATCTACTTGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAATCCAAAGCCAAGAAGCAAATTGTGGTCAAACTACAAACCTAGTTAATGAAAATGGTAGCTCAAAATGTCACATTCCAAGCTTCAACAATGAATTTTGGGACAATTCTGCATTCAATGCTCAAAAGACAGAAATTGAAGATGAAATAATGTTTTCTACTTCAAATGGTTTGGCATCTCAAGAAACAGATTTTTGCTATCAAAATCTTGGATTGACTCATCATTTGAGTTTGCCTAGTTCATCTACAAAGATATCATCCATGGACAAGTTTCTTCAAGTTCAAGGAACAGTTCCTTGTAAAATTCGAGCAAAAAGAGGCTTTGCAACTCATCCAAGAAGCATTGCCGAGAGGGTAAGAAGAACGCGAATAAGTGAAAGAATCAAGAAACTGGAAAGTCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGACTTGGCAGTTGATTACATTAAAGACTTGCAAAAACAAGTCCAGATACTCACAGTTCGTAAGGAAAAATGCAAATGTACAACTCATGAGAAGCAACACTCTAGACAATGCAGCTGA 1161 0.3592 MDSSSIIHSKQHYHQQHNSGLLMRYNSAPTSLLTSLIDNNTQSYLNNEESFTSESSSSEMDTMLSKLISSNNGWNNSEEPLQEFDVKPVKQEIGESVPQNGDYSYGGSDLIYHGFSNGSSNGFYGSFGVVSSKIGVRNSSSNLIRQKSSPAGFYSNENVEGLATLRELGSFKANEVSNGTLNFSSRPSTCLKRMPQIAENGIQSQEANCGQTTNLVNENGSSKCHIPSFNNEFWDNSAFNAQKTEIEDEIMFSTSNGLASQETDFCYQNLGLTHHLSLPSSSTKISSMDKFLQVQGTVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLESLFPKSDKQTSTADMLDLAVDYIKDLQKQVQILTVRKEKCKCTTHEKQHSRQCS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00654 386 Pfam Helix-loop-helix DNA-binding domain 314 359 IPR011598 GO:0046983
Trre5g00654 386 FunFam Transcription factor bHLH130 family 309 378 - -
Trre5g00654 386 Gene3D - 310 384 IPR036638 GO:0046983
Trre5g00654 386 SMART finulus 314 364 IPR011598 GO:0046983
Trre5g00654 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 374 IPR036638 GO:0046983
Trre5g00654 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 358 IPR011598 GO:0046983
Trre5g00654 386 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00654 Trre-Chr5 4369464 4371704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00654 7 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.584 1.11e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g00654 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00654 - - gmx:100812802 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00654 5 4369464 4371704 Trre15g01383 15 10759130 10762283 ECH
Trre5g00654 5 4369464 4371704 Trre5g00654 5 4369464 4371704 ECH