Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00653 ATGAGTATTATGTATGAAGAGCTAAGAAGAAACCAAGAAATGGATTCTTCAAGTATAATTCATTCCAAACAACACTATCATCAACAACATAATTCTGGACTACTTATGAGGTACAATTCAGCTCCAACTTCATTGCTTACAAGCCTTATTGACAACAACACTCAAAGCTATCTAAACAATGAAGAATCTTTTACAAGTGAAAGTTCAAGTTCAGAAATGGATACTATGTTGTCTAAGTTGATATCATCCAATAATGGATGGAACAATTCTGAAGAACCTTTGCAAGAGTTTGATGTGAAGCCTGTGAAGCAAGAAATAGGTGAATCTGTTCCACAAAATGGTGATTATTCTTATGGTGGATCTGATTTGATTTACCACGGCTTTTCAAATGGTTCTAGTAATGGATTTTATGGATCTTTTGGAGTAGTTAGCTCTAAAATTGGTGTAAGGAATTCTTCTTCCAATCTAATTAGGCAAAAGAGCTCACCTGCTGGATTTTACTCTAATGAAAATGGTCTTGCAACATTAAGAGAGTTAGGAAGCTTTAAAGCCAATGAAGTCTCAAATGGTACTCTTAACTTCTCATCTAGGCCATCTACTTGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAATCCAAAGCCAAGAAGCAAATTGTGGTCAAACTACAAACCTAGTTAATGAAAATGGTAGCTCAAAATGTCACATTCCAAGCTTCAACAATGAATTTTGGGACAATTCTGCATTCAATGCTCAAAAGACAGAAATTGAAGATGAAATAATGTTTTCTACTTCAAATGGTTTGGCATCTCAAGAAACAGATTTTTGCTATCAAAATCTTGGATTGACTCATCATTTGAGTTTGCCTAGTTCATCTACAAAGATATCATCCATGGACAAGTTTCTTCAAGTTCAAGGAACAGTTCCTTGTAAAATTCGAGCAAAAAGAGGCTTTGCAACTCATCCAAGAAGCATTGCCGAGAGGGTAAGAAGAACGCGAATAAGTGAAAGAATCAAGAAACTGGAAAGTCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGACTTGGCAGTTGATTACATTAAAGACTTGCAAAAACAAGTCCAGATACTCACAGTTCGTAAGGAAAAATGCAAATGTACAACTCATGAGAAGCAACACTCTAGACAATGCAGCTGA 1194 0.3576 MSIMYEELRRNQEMDSSSIIHSKQHYHQQHNSGLLMRYNSAPTSLLTSLIDNNTQSYLNNEESFTSESSSSEMDTMLSKLISSNNGWNNSEEPLQEFDVKPVKQEIGESVPQNGDYSYGGSDLIYHGFSNGSSNGFYGSFGVVSSKIGVRNSSSNLIRQKSSPAGFYSNENGLATLRELGSFKANEVSNGTLNFSSRPSTCLKRMPQIAENGIQSQEANCGQTTNLVNENGSSKCHIPSFNNEFWDNSAFNAQKTEIEDEIMFSTSNGLASQETDFCYQNLGLTHHLSLPSSSTKISSMDKFLQVQGTVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLESLFPKSDKQTSTADMLDLAVDYIKDLQKQVQILTVRKEKCKCTTHEKQHSRQCS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00653 397 Gene3D - 321 395 IPR036638 GO:0046983
Trre5g00653 397 SMART finulus 325 375 IPR011598 GO:0046983
Trre5g00653 397 Pfam Helix-loop-helix DNA-binding domain 325 370 IPR011598 GO:0046983
Trre5g00653 397 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 391 - -
Trre5g00653 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 385 IPR036638 GO:0046983
Trre5g00653 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 369 IPR011598 GO:0046983
Trre5g00653 397 FunFam Transcription factor bHLH130 family 320 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00653 Trre-Chr5 4369425 4371704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00653 20 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.844 6.01e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g00653 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00653 - - gmx:100812802 479.944