Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00647 ATGGCTCAGAGAACTGAAAACGAAGAAACTGAATTCAAAGTTGTACCTGAAACCATAACGCTTTGTATCAACAACTGTGGCGTAATCGGTAACGCTTCAACGAACAACATGTGTCAAAATTGTTTCACGGCGTCAACGGCAACAACCTCATCCACCACCACCGTTAGAATCGGAAACAAAATTTCATCTCAATCTTCCAAATCTGTTCGTTCTCCGAAGAGATCTTTTCCGGAGGAATCATCATCGATTGTTACCGATCGGAGTTCGTTAGATCAAGCGACGTTTTCTGAGGCGAAGCGTGTTGTAAGTCGATGCTCTGGTTGCCGGAAAAAGGTAGGGTTGACCGGATTCCGATGTAGATGCGGTGATCTTTTCTGTTCGGAACATCGGTACTCTGATCGTCATGATTGTAGCTATGATTACAAAGCTGCTGGAAGAGAAGCGATTGCGAAGGAGAATCCTGTTATCAGAGCCGCGAAAATCGTTAAGGTCTGA 495 0.4465 MAQRTENEETEFKVVPETITLCINNCGVIGNASTNNMCQNCFTASTATTSSTTTVRIGNKISSQSSKSVRSPKRSFPEESSSIVTDRSSLDQATFSEAKRVVSRCSGCRKKVGLTGFRCRCGDLFCSEHRYSDRHDCSYDYKAAGREAIAKENPVIRAAKIVKV 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00647 164 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 163 - -
Trre5g00647 164 ProSiteProfiles Zinc finger A20-type profile. 16 50 IPR002653 GO:0003677|GO:0008270
Trre5g00647 164 Pfam A20-like zinc finger 21 42 IPR002653 GO:0003677|GO:0008270
Trre5g00647 164 MobiDBLite consensus disorder prediction 61 84 - -
Trre5g00647 164 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 79 - -
Trre5g00647 164 FunFam Zinc finger AN1-type containing 6 78 160 - -
Trre5g00647 164 Gene3D - 1 76 - -
Trre5g00647 164 SUPERFAMILY AN1-like Zinc finger 90 158 IPR035896 -
Trre5g00647 164 Gene3D - 78 160 IPR035896 -
Trre5g00647 164 ProSiteProfiles Zinc finger AN1-type profile. 99 145 IPR000058 GO:0008270
Trre5g00647 164 SMART AN1_Zf_4 105 142 IPR000058 GO:0008270
Trre5g00647 164 Pfam AN1-like Zinc finger 105 142 IPR000058 GO:0008270
Trre5g00647 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00647 Trre-Chr5 4322194 4322688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00647 16 164 C2H2 Transcription Factor Family AT3G52800 37.126 1.12e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00647 - - vum:124827556 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00647 5 4322194 4322688 Trre5g00647 5 4322194 4322688 ECH