Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00643 ATGTCAAAAAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCGTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGATTGGAAAGCTCCTCCAAATAATATATGCACTTTTTATCAGAAAGGAGTTTGTGCTTATGGTAGCCGCTGTAGGTATGATCATGTCAAAGCTTCTCAATCACCGTCCTCTACTCCATCTTCTTCAATAATCGAGCACCGGCCCCTTGTTTCAGAATCTGTTGTTCTTGGTAATACAAGAATTACATCGAACGATGTTGCTACAGCTGCAGAATTTTCTCTTTTCAACACTCCTTATGTTGTTCCTAGTGAACCAGCCTGGAATCAAGAATCTGCAAATCATGACTTCTTAAGGGAAGATGATGTTGGTCAATTGTTAATTACTTCACCTTCTGATATTCCGATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGAGAGCAATGTCCTCATGTACACGGAGATTTATGCCCTTCGTGTGGAAGGCATTGCTTGCATCCTTTCCGTCCTGAAGAAAGAGAAGAGCATATGAAAAGTTGTGAAAATAAGCAAAAGCATCTCGAGGCGTTGAAAAAAAGTCAAGAAGTTGAATGCTGTGTTTGCCTGGAACGTGTTCTTTCAAAGCCTACAGCAGCTGAACGTAAGTTTGGTGTGCTATCTGAATGTGATCATCCCTTCTGCATATCCTGTATTAGAAATTGGCGTAGTAGCAACCCAACATTGGGGATGGATGTGAATAGCACATTGCGGGCTTGTCCCATCTGCCGCAAGCTATCTTACTTTGTCGTTCCAAGTGTTATTTGGTATGCTACAAGTGAAGAAAAACAGGACATCGTTAATACCTACAAGGCGAAGCTCAAGTCAATCGACTGCAAGCATTTTGACTTTGGGCATGGAAACTGCCCTTTTGGAACTAGCTGCTTCTACAAGCATGCATATCGAGATGGCCGTCTTGAGGAGGTAGCTTTGCGACATCTTGGGGCTGCAGATGGTGACACCATAATTGCCAAAGATATCAGGTTGTCGGATTTCCTTGCTACCATGCGTTTAAGTTGA 1074 0.4274 MSKRVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSRCRYDHVKASQSPSSTPSSSIIEHRPLVSESVVLGNTRITSNDVATAAEFSLFNTPYVVPSEPAWNQESANHDFLREDDVGQLLITSPSDIPICSFAAAGNCPRGEQCPHVHGDLCPSCGRHCLHPFRPEEREEHMKSCENKQKHLEALKKSQEVECCVCLERVLSKPTAAERKFGVLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVVPSVIWYATSEEKQDIVNTYKAKLKSIDCKHFDFGHGNCPFGTSCFYKHAYRDGRLEEVALRHLGAADGDTIIAKDIRLSDFLATMRLS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00643 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 267 IPR013083 -
Trre5g00643 357 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Trre5g00643 357 Pfam Ring finger domain 203 262 IPR001841 -
Trre5g00643 357 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Trre5g00643 357 Pfam RNA-binding, Nab2-type zinc finger 296 318 - -
Trre5g00643 357 Pfam RNA-binding, Nab2-type zinc finger 140 159 - -
Trre5g00643 357 CDD RING-HC_MKRN 202 262 - -
Trre5g00643 357 Coils Coil 183 203 - -
Trre5g00643 357 ProSiteProfiles Zinc finger RING-type profile. 204 262 IPR001841 -
Trre5g00643 357 PANTHER MAKORIN-RELATED 5 328 IPR045072 GO:0000209|GO:0061630
Trre5g00643 357 Gene3D - 32 162 - -
Trre5g00643 357 SMART ring_2 204 261 IPR001841 -
Trre5g00643 357 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Trre5g00643 357 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Trre5g00643 357 SMART c3hfinal6 291 319 IPR000571 GO:0046872
Trre5g00643 357 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Trre5g00643 357 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Trre5g00643 357 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Trre5g00643 357 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Trre5g00643 357 SUPERFAMILY RING/U-box 193 268 - -
Trre5g00643 357 ProSiteProfiles Zinc finger C3H1-type profile. 135 162 IPR000571 GO:0046872
Trre5g00643 357 Gene3D - 1 31 - -
Trre5g00643 357 ProSiteProfiles Zinc finger C3H1-type profile. 291 320 IPR000571 GO:0046872
Trre5g00643 357 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Trre5g00643 357 Pfam CCCH-type zinc finger 34 53 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00643 Trre-Chr5 4297017 4299886 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g00643 zf-RING_2 2.7e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00643 K15687 - gmx:100787817 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00643 5 4297017 4299886 Trre5g00643 5 4297017 4299886 ECH