Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00623 ATGGCAGCACTACGAGACATTTCTGCAACCTTGCTTTCTCGCTCAAAACCCCACGCTTCTCTTTTTCAACGTCTCTTCCTTCGTAGAAATACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAAGAGAAATTAGCCGAAGCTTTTTCTCAATACGGAAATGTACTCAAAGCTGATGTAGTATTGAATAAAGCCAAGAATAGATCAAAAGGCTTTGGATATGTTACTTTTGCTGAGGAGGAAGGAGCCCGCAAGGCCCAGATTGGCATGAATGGAAAGATATTACACGGACGTGTCTTATTTGTAGACATAGATCCACCTAACAAGGAGAAGAAAACTTAG 351 0.3989 MAALRDISATLLSRSKPHASLFQRLFLRRNTSKIFVKGLAFSTTEEKLAEAFSQYGNVLKADVVLNKAKNRSKGFGYVTFAEEEGARKAQIGMNGKILHGRVLFVDIDPPNKEKKT 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00623 116 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 108 - -
Trre5g00623 116 SMART rrm1_1 33 106 IPR000504 GO:0003723
Trre5g00623 116 SUPERFAMILY RNA-binding domain, RBD 29 113 IPR035979 GO:0003676
Trre5g00623 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Trre5g00623 116 Gene3D - 12 116 IPR012677 -
Trre5g00623 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00623 Trre-Chr5 4133296 4139902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00623 26 105 Eukaryotic Initiation Factors Gene Family AT1G22760 37.500 4.33e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00623 - K13195 gmx:100527061 158.688