Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00622 ATGATTCTTTTTCCAGCTTACTTGAATTTGCTTCTAACAATGATTTTGAAGAATTTAAGAACCCCGTTAATGGTGGCTGCTTCCTATGGGAGTATTGATACTCTAAAGCTTATACTCTCTTGTCCAGAAGCTGATGTTAATTTCTCCTGTGGGACGGATAAAGGCACTGCTCTTCACTGTGCTGCTTCAGGGGGTTCTGTTAATGCAGTTGATGCTGTAAAACTGCTTTTATCAGCTGGTGCTGATATCAATTGTGTGGATGCTAATGGGAACCGTCCAGTTGATGTTATTGTTGTTCCTCCTAAGCTTGGTGGTGTGAAAACAATTCTTGAAGAACTTCTCTCAGACAGTGCTTCTGATGGGTCTGTTGATGATTGTTCTCTTCCAGCATCTATTAATTCATCAAGTCCTCGTTCAGCTGCCCCTTTTTCATCAAATGAAAATGGGTCTCCATCCTCTCCTGGGGCTACTCCTAAGTTTGCCGACACAGCTGTCAATTTTACATCAGACAAGAAAGAGTATCCAATTGATCCATCACTCCCTGATATAAAAAACAGCATATATGCCACAGATGAATTCCGCATGTTTTCGTTCAAGGTCCGTCCTTGTTCTCGGGCATACTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGAAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGCAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTGCACCCAGCTCAGTATAGAACAAGGCTCTGCAAAGATGGTACCAGTTGTAACCGAAGGGTGTGCTTTTTTGCTCACATACCTGAAGAGCTTCGTCCGTTGTATGTGTCCACTGGATCTGCTGTTCCTTCACCTCGATCAGCTGCTTCTACTGCTAATGTCATGGACATGGCTGCTGCAATGAGCCTTTTTCCTGGTTCACCATCATCAATCTCGTCCATGTCTCCATCTCCCTTTGCACAGCCATTATCTCCATCTTCTAATGGCATCTCTCACTCAAATAATGCTTGGCCACAGCCAAATGTGCCTGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGTTTGAGATCTTCTCTTAGTGCCCGTGACATGCCACTTGATGACTTCAACAATATGTTGCAAGACTTTGATGGTCAACAGCACATACTAAATGACTTGAGCTGTTTCTCACAGCCCCGTCCTGGTGCTATTTCTGTGAGTCGATCTGGTCGGTCTAAAACACTAACTCCATCAAATCTTGAAGATCTATTTTGTGCTGAAATTTCATCATCTCCTCGGTATTCCGACCCAGCAGCGGCTTCTGTATTTTCCCCAACACACAAATCTGCTGTCTTTAACCAGTTTCAACAGCTCCAAAGTTCTTTGTCACCTATTAATACAAATGTCATGTCTCCTAAGAATGTAGAGCATCCTCTATTCCACCAGGCTTCGTATGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAACCCCTCTCTCCAATGAATTCTCGATTGTCAGCATTTGCTCAGCGTGAGATGCAGCAACAACAGATGCGGAGCCTTTGTTCAAGAGAACTTGGTGCTAACAATCATGTCTCGGCTGTTGGGTCCCCTGGTAACTCCTGGTCCAAGTGGGGATCCCCTACTGGAAAAGCAGATTGGTCGGTGAATGGACATGAGTTTGGACGTTCTCCAAGATCCACCTCTTTTGAGCGTGGAAACAATGGTCAGGAGCCTGATCTATCTTGGGTTCATTCCCTTGTCAAGGAATCCCCGCCTGAGATAAAAGAGAAGCTAGCAGGTTCTGGTCCTATTGCATCTGCTGAACCGAATTCCAATCCTCAAGCGGAGTCTATTGATCATTCAGTTTTAGGAGCTTGGCTCGAGCAAATGCAGCTGGATCAACTTGTAGTCTAG 1977 0.4492 MILFPAYLNLLLTMILKNLRTPLMVAASYGSIDTLKLILSCPEADVNFSCGTDKGTALHCAASGGSVNAVDAVKLLLSAGADINCVDANGNRPVDVIVVPPKLGGVKTILEELLSDSASDGSVDDCSLPASINSSSPRSAAPFSSNENGSPSSPGATPKFADTAVNFTSDKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHIPEELRPLYVSTGSAVPSPRSAASTANVMDMAAAMSLFPGSPSSISSMSPSPFAQPLSPSSNGISHSNNAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPLDDFNNMLQDFDGQQHILNDLSCFSQPRPGAISVSRSGRSKTLTPSNLEDLFCAEISSSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNVEHPLFHQASYGVSSPGRMSPRSMEPLSPMNSRLSAFAQREMQQQQMRSLCSRELGANNHVSAVGSPGNSWSKWGSPTGKADWSVNGHEFGRSPRSTSFERGNNGQEPDLSWVHSLVKESPPEIKEKLAGSGPIASAEPNSNPQAESIDHSVLGAWLEQMQLDQLVV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00622 658 MobiDBLite consensus disorder prediction 553 570 - -
Trre5g00622 658 ProSiteProfiles Ankyrin repeat profile. 53 88 IPR002110 GO:0005515
Trre5g00622 658 MobiDBLite consensus disorder prediction 552 600 - -
Trre5g00622 658 SUPERFAMILY Ankyrin repeat 17 124 IPR036770 -
Trre5g00622 658 Gene3D - 6 136 IPR036770 -
Trre5g00622 658 FunFam Zinc finger CCCH domain-containing protein 66 190 258 - -
Trre5g00622 658 PANTHER UNKEMPT FAMILY MEMBER 14 611 IPR045234 -
Trre5g00622 658 MobiDBLite consensus disorder prediction 132 160 - -
Trre5g00622 658 ProSiteProfiles Zinc finger C3H1-type profile. 237 259 IPR000571 GO:0046872
Trre5g00622 658 SMART ANK_2a 53 85 IPR002110 GO:0005515
Trre5g00622 658 SMART ANK_2a 18 48 IPR002110 GO:0005515
Trre5g00622 658 MobiDBLite consensus disorder prediction 337 361 - -
Trre5g00622 658 Gene3D - 233 295 - -
Trre5g00622 658 SMART c3hfinal6 232 258 IPR000571 GO:0046872
Trre5g00622 658 SMART c3hfinal6 267 290 IPR000571 GO:0046872
Trre5g00622 658 MobiDBLite consensus disorder prediction 614 638 - -
Trre5g00622 658 Pfam Ankyrin repeats (3 copies) 19 87 IPR002110 GO:0005515
Trre5g00622 658 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Trre5g00622 658 ProSiteProfiles Ankyrin repeat region circular profile. 53 87 - -
Trre5g00622 658 MobiDBLite consensus disorder prediction 581 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00622 Trre-Chr5 4127846 4129914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00622 1 655 C2H2 Transcription Factor Family AT5G12850 53.800 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g00622 Ank_2 1.3e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00622 - - gmx:100813725 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00622 5 4127846 4129914 Trre5g00622 5 4127846 4129914 ECH