Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00616 ATGAATGGTTCCGTGAGAGTGATCTCCACGAGTACAATCCAAGCACCAAGTGACAATAATAATGGCAACTCAAATGATTTTCAGAAAATTCATTTAACACCATGGGATCTCCAATTCCTCCCACTTGAAACCATCCAAAAAGGCCTTCTTTTCCACAACCCCATCGACCCATCAAAAGACCAATTAATCTATCATTTGAAACAATCACTATCCTCCACTCTTTCCTTCTTTCCGCCCCTCGCTGGTCGTCTTGTAATCACTCAACACGATGAAGAAGAAGAAGAAGGTAACATTGCCTCATGTTTCATCATTTGCAACAATGTTGGTGCACTCTTCGTCCATGCCAAAGCAGAAAACACTACCGTTTCCGATATCATTACTCCATCCAACAACTACATTGTACCTTCCATTGTCTACTCCTTATTCCCTCTCAACGGCGTCAAAAACTGGGAAGCCACTTCAAAGCCAATTCTAGCTGTTCAAGTAACGGAGTTACTTGATGGCCTCTTTATTGGCTTTACAATCAACCACTTAGCATCGGATGTCCAAAGCACCAAGCCCAGCAACTTATCTGAAGGAGTATTCCATTTCACAAAGGAGAAAATTGCGCAACTCAAATTCAAAGCAAACACAGAAACAAAAAATGAGAATAATATTAAAATATCATCGCTTCAAGCGGTATTAGCTCATGTTTTGCGTTGTATTGTTCGTTGCGAAAAACTTGATCAAGAACAAGAGGTTCTTTACATCTTAGCAATAGGTGTTAGAGAAAGGATGATCCCCCCGCTTGATGAGAATTATTTCGGAAACGCCACAATTGTTAGTGGTTTTACAATGAAAGCCAGGGAAATTCTAAAGTGTGGGAATTTTGCAAAGGTTGCTTTAGAGATGAACAAGACAATTTCTTCAAATTCTAATGATGAGAAAATTAAAAATAATTATGAGTCATGGTTGAGAAAACCAAAGTTGCTTACAGGTGGTGATTTGACTCGTTGTTATTCCTTGACAACAAGCAGTTCTCCAAGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGAAAGCCGGTCGCTGTTCGATGCGGAGGTGCAAATAAAAGAAAAGGGAAGATTACTGTGTTTGCTGGTGCTGAAGAGGGTAGTATTGACATTGTACCTTGTCTTCCTTACCAGATTTTGGAGGCCATGGGAAATGACAATGAGTTCATGCATGGTTAA 1215 0.3984 MNGSVRVISTSTIQAPSDNNNGNSNDFQKIHLTPWDLQFLPLETIQKGLLFHNPIDPSKDQLIYHLKQSLSSTLSFFPPLAGRLVITQHDEEEEEGNIASCFIICNNVGALFVHAKAENTTVSDIITPSNNYIVPSIVYSLFPLNGVKNWEATSKPILAVQVTELLDGLFIGFTINHLASDVQSTKPSNLSEGVFHFTKEKIAQLKFKANTETKNENNIKISSLQAVLAHVLRCIVRCEKLDQEQEVLYILAIGVRERMIPPLDENYFGNATIVSGFTMKAREILKCGNFAKVALEMNKTISSNSNDEKIKNNYESWLRKPKLLTGGDLTRCYSLTTSSSPRFDVYGNDFGWGKPVAVRCGGANKRKGKITVFAGAEEGSIDIVPCLPYQILEAMGNDNEFMHG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00616 404 Pfam Transferase family 28 185 - -
Trre5g00616 404 Pfam Transferase family 197 402 - -
Trre5g00616 404 MobiDBLite consensus disorder prediction 1 25 - -
Trre5g00616 404 Gene3D - 187 398 IPR023213 -
Trre5g00616 404 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 189 402 - -
Trre5g00616 404 Gene3D - 3 186 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00616 Trre-Chr5 4034584 4035942 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00616 181 387 Monolignol Biosynthesis Gene Families AT5G48930 23.558 4.06e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00616 - - adu:107480292 398.282