Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00608 ATGAATGGTTCCGTGAGAGTGATCTCCACGAGTACAATCCAAGCACCAAGTGACAATAATAATGGCAACTCAAATGATTTTCAGAAAATTCATTTAACACCATGGGATCTCCAATTCCTCCCACTTGAAACCATCCAAAAAGGCCTTCTTTTCCACAACCCCATTGACTCATCAAAAGACCAATTAATCTATCATTTGAAACAATCACTATCCTCCACTCTTTCCTTCTTTCCGCCCCTCGCTGGTCGTCTTGTAATCACTCAACACGATGAAGAAGAAGAAGAAGGTAATATTGCCTCATGTTTCATCATTTGCAACAACGTTGGTGCACTCTTCGTCCATGCCAAAGCAGAAAACACTACCGTTTCCGATATCATTACTCCATCCAACAACTACATTGTACCTTCCATTGTCTACTCCTTATTCCCTCTCAACGGCGTCAAAAACTGGGAAGCCACTTCAAAGCCAATTCTAGCTGTTCAAGTAACGGAGTTACTTGATGGCCTCTTTATTGGCTTTACAATCAACCACTTAGCATCGGATGTCCAAAGCACCAAGCCCAGCAACTTATCTGAAGGAGTATTCAATTTCACAAAGGAGAAAATTGCGCAACTCAAATTCAAAGCAAACACAGAAACAAAAAATGAGAATAATATTAAAATATCATCGCTTCAAGCGGTATTAGCTCATGTTTTGCGTTCTATTGTTCGTTGCGAAAAACTTGATCCAGAACAAGAGGTTCTTTACATCTTAGCAATAGGTGTTAGAGAGAGGATGATCCCCCCGCTTGATGAGAATTATTTCGGAAACGCCACAATTGTTAGTGGTTTTACAATGAAAGCCAGGGAAATTCTAGAGTGTGGGAATTTTGCAAAGGTTGCTTTAGAGATGAACAAGACAATTTCTTCAAATTCTAATGATGAGAAAATAAAAAATAATTATGAGTCATGGTTGAGAAAACCAAAGTTGCTTACAGGTTGTGATTTGACTCGTTGTTATTCCTTGACAACAAGCAGTTCTCCAAGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGAAAGCCGGTCACTGTTCGATGCGGAGGTGCAAATAAAAGAAAAGGGAAGATTACTGTGTTTGCTGGTGCTGAAGAGGGTAGTATTGACATTGTACCTTGTCTTCCTTACCAGATTTTGGAGGCTATGGGAAATGACAATGAGTTCATGCATGGTTAA 1215 0.3959 MNGSVRVISTSTIQAPSDNNNGNSNDFQKIHLTPWDLQFLPLETIQKGLLFHNPIDSSKDQLIYHLKQSLSSTLSFFPPLAGRLVITQHDEEEEEGNIASCFIICNNVGALFVHAKAENTTVSDIITPSNNYIVPSIVYSLFPLNGVKNWEATSKPILAVQVTELLDGLFIGFTINHLASDVQSTKPSNLSEGVFNFTKEKIAQLKFKANTETKNENNIKISSLQAVLAHVLRSIVRCEKLDPEQEVLYILAIGVRERMIPPLDENYFGNATIVSGFTMKAREILECGNFAKVALEMNKTISSNSNDEKIKNNYESWLRKPKLLTGCDLTRCYSLTTSSSPRFDVYGNDFGWGKPVTVRCGGANKRKGKITVFAGAEEGSIDIVPCLPYQILEAMGNDNEFMHG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00608 404 Gene3D - 3 182 IPR023213 -
Trre5g00608 404 Gene3D - 183 397 IPR023213 -
Trre5g00608 404 MobiDBLite consensus disorder prediction 1 25 - -
Trre5g00608 404 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 188 402 - -
Trre5g00608 404 Pfam Transferase family 197 402 - -
Trre5g00608 404 Pfam Transferase family 28 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00608 Trre-Chr5 3979766 3981124 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00608 181 387 Monolignol Biosynthesis Gene Families AT5G48930 24.038 2.78e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00608 - - adu:107480292 400.593