Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00604 ATGGATGATTACTATTGTAAGGCATGGCTACGTTTCTCAGGTTCCAACAGACAAACTATTTCATGTGATGCCAATTACAAGTATTTCAACATTCAATTTGATTACAAAACCATGTTTGTCCCAACTAATCATACAATGCTTCAATCTTCTTTTGGAGACATTCAACGTTACACTCTTCGTAACGTCTCAATGGATAGGATAATGGGTGAAAATACTTTTGCGTCGTGGTTTTCTCAAATAAACATTCCTCAAGATGCTTTTACATTGGTGCAAGAAGAAATCATGCAATGTGCTTCTGATATAGTTCATGATGAGACTTATAAGAATAGAAAGTGTTTTACTATTCGAGTCGAGTTTTCTGTTACAAGGACTATTGAAATTGAAAGTGATCAAGATGATTATGATTTGGAAGAGGATGAAGACCTAATGATGATTGAAGAAGAACATACTAGGTTTATTCCCGCGGCTAAATCGTGTCTTGAAGAATTGAAGATGGTAAAAGCAAAAGAAATAACAAAATGTACCATTTGTTTTGAAGATGTTAAAGTTGGTGTTCCACTTCCATGTTCCCACATGTTTCATATGAATTGCATTCAAGATTGGTTGGTGATAGGTCATTGTTGCCCTTTGTGTAGGTTTCAATTGCCTATGAGTGAATAA 660 0.3485 MDDYYCKAWLRFSGSNRQTISCDANYKYFNIQFDYKTMFVPTNHTMLQSSFGDIQRYTLRNVSMDRIMGENTFASWFSQINIPQDAFTLVQEEIMQCASDIVHDETYKNRKCFTIRVEFSVTRTIEIESDQDDYDLEEDEDLMMIEEEHTRFIPAAKSCLEELKMVKAKEITKCTICFEDVKVGVPLPCSHMFHMNCIQDWLVIGHCCPLCRFQLPMSE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00604 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 216 - -
Trre5g00604 219 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
Trre5g00604 219 SMART ring_2 174 211 IPR001841 -
Trre5g00604 219 SUPERFAMILY RING/U-box 173 217 - -
Trre5g00604 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 219 IPR013083 -
Trre5g00604 219 Pfam Ring finger domain 173 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00604 Trre-Chr5 3943380 3944039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00604 128 216 C3H Transcription Factor Family AT5G60820 37.500 1.00e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00604 - - tpra:123917079 277.715