Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00592 ATGGAAGCCGCAGTTATCGACGCCGGTTCCAGCCTTCTCAAAGCCGGTTTTGCAATTCCCGATCAAACTCCCGCCATGATAATTCCTAGTCAGATGAAACGTATGGTTGACGATAAGGGATCAGCGGATGATAATGGTAATGGTAATGGTCAGTTAGTGGTGGATGATGTTGCTGTTGAACCGGTGGTTCGAGGTTATGTTAGAGATTGGGATGCTATGGAGGATTTGTTGAATTATGTTTTGTATTCTGGTCTTGGATGGGAAATTGGTAATGAAGGACAAATACTCTTTACGGATCCACTTTGTACCCCAAAGGCTAACAAAGAACAGCTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCATCGGAACAGGCAGTGCTGTCGCTCTATGCTGTTGGAAGGATATCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCTCCAGTAATTGAGGGTGCTGTTAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCCTGGCTCAAGAACTTGGAAAATCCAATCCACTAGTGAATATCAGCATGTCGGATGTTGAGAAAATAAAACAGCAATACTCATGTTGTGCTGAAGATGACTTAGCCTATCAGAAGACCGAAGATTCTTGTCCTGTGGAGACACATACCCTTCCTGATGGACAGGTGATAACAATTGGAAGAGAAAGATATACAGTTGGTGAAGCTTTATTCCAGCCAAGCCTATTGGGTTTAGAGTCTCATGGTATTGTAGAGCAGCTTGTCCGTACTATTTCAACTGTGACATCTGATAATCACCGGCAACTTCTCGAAAATACTGTAGTTTGTGGTGGCACTTCTTCCATGACCGGATTTGAAGAGAGATTTCAGAAGGAATCTTTGCTAAGTTCATCTGCTGTTCGACCTACCTTGGTTAAGCCTCCAGAATATATGCCGGAAAATTTAACTACATATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAGCATGTAACTAAGGCAGACTATGATGAAAATGGGCCTTCCATTGTTCACCGGAAATGCTTCTGA 1107 0.421 MEAAVIDAGSSLLKAGFAIPDQTPAMIIPSQMKRMVDDKGSADDNGNGNGQLVVDDVAVEPVVRGYVRDWDAMEDLLNYVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPLVNISMSDVEKIKQQYSCCAEDDLAYQKTEDSCPVETHTLPDGQVITIGRERYTVGEALFQPSLLGLESHGIVEQLVRTISTVTSDNHRQLLENTVVCGGTSSMTGFEERFQKESLLSSSAVRPTLVKPPEYMPENLTTYSAWVGGAILAKVVFPQNQHVTKADYDENGPSIVHRKCF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00592 368 FunFam Actin-related protein 7 172 259 - -
Trre5g00592 368 Gene3D Actin; Chain A, domain 4 172 259 - -
Trre5g00592 368 Pfam Actin 2 368 IPR004000 -
Trre5g00592 368 Gene3D - 5 362 - -
Trre5g00592 368 SUPERFAMILY Actin-like ATPase domain 2 145 IPR043129 -
Trre5g00592 368 SUPERFAMILY Actin-like ATPase domain 138 368 IPR043129 -
Trre5g00592 368 CDD NBD_sugar-kinase_HSP70_actin 4 173 - -
Trre5g00592 368 FunFam Actin-related protein 7 4 134 - -
Trre5g00592 368 PRINTS Actin signature 107 120 IPR004000 -
Trre5g00592 368 PRINTS Actin signature 224 240 IPR004000 -
Trre5g00592 368 PRINTS Actin signature 132 151 IPR004000 -
Trre5g00592 368 PRINTS Actin signature 23 32 IPR004000 -
Trre5g00592 368 PRINTS Actin signature 52 74 IPR004000 -
Trre5g00592 368 Gene3D - 130 331 - -
Trre5g00592 368 PANTHER ACTIN 4 361 IPR004000 -
Trre5g00592 368 SMART actin_3 1 368 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00592 Trre-Chr5 3815393 3820937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00592 1 368 Cytoskeleton Gene Families AT3G18780 36.979 1.52e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00592 K16615 - gmx:100794153 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00592 5 3815393 3820937 Trre5g00592 5 3815393 3820937 ECH