Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00586 ATGGATGATTACTATTGTAAGGCATGGCTATGTTTCTCAGATTCCAACCCACAAACTATTTCATGTGATGCCAATTACAAGTATTTCAACATTCAATTTGATTACAAAACCATGTTTGTCCCAACTGATCATACAATGCTTCAATCTTCTTTTGGAGACATTCAACGTCACACTCTTCGTAACGTCTCAATGGATAGGATAATGGATGAAAATACTTTTGTGTCTTGGTTTTCTCAAATAAACATTCCTCAAGATGCTTTTACATTGGTGCAAGAAGAAATCATGTGTGCTGCTGATATAGTTCATGATGAGACTTATAAGAACAGAAAGTTTTTTACTATTCGAGTCGAGTTTTCTGTTACAAGGACTATTGAAGTTGTTGATTGTGAAGATGAAGAAGATAATGGGTTGATTCCTGATGTTATTGAAATTGAAAGTGATGAAGGTGATTATGATTTGGAAGAGGATGAAGACCTAATGATGATTGAAGAAGAACATACTAGGTTTATTCCCGCGGCTAAATCGTGTCTTGAAGAATTGAAGATGGTAAAAGCAGAAGAAATAACAAAATGTACCATTTGTTTTGAAGATGTTAACGTTGGTGTTCCACTTCCATGTTCCCACATGTTTCATATGAATTGCATTCAAGATTGGTTGGTGATAGGTCATTGTTGCCCTTTGTGTAGGTTTCAATTGCCTATGAGTGAATAA 711 0.3502 MDDYYCKAWLCFSDSNPQTISCDANYKYFNIQFDYKTMFVPTDHTMLQSSFGDIQRHTLRNVSMDRIMDENTFVSWFSQINIPQDAFTLVQEEIMCAADIVHDETYKNRKFFTIRVEFSVTRTIEVVDCEDEEDNGLIPDVIEIESDEGDYDLEEDEDLMMIEEEHTRFIPAAKSCLEELKMVKAEEITKCTICFEDVNVGVPLPCSHMFHMNCIQDWLVIGHCCPLCRFQLPMSE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00586 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 236 IPR013083 -
Trre5g00586 236 Pfam Ring finger domain 190 229 IPR001841 -
Trre5g00586 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 233 - -
Trre5g00586 236 SMART ring_2 191 228 IPR001841 -
Trre5g00586 236 SUPERFAMILY RING/U-box 190 234 - -
Trre5g00586 236 ProSiteProfiles Zinc finger RING-type profile. 191 229 IPR001841 -
Trre5g00586 236 CDD RING-H2 191 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00586 Trre-Chr5 3792077 3792787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00586 138 233 C3H Transcription Factor Family AT5G60820 36.937 1.01e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00586 - - tpra:123916835 296.204