Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00585 ATGGAAGAATATGATTGCCATGCATACCCAGACAATAAGTCCAACAATTTTGACACAGAAAATATTTCATCATGCCCCCATGGCCATGATAAATATTTCAATGTAGAGTTTGGGTGCATAAATTCTTCTACTTTGTGTGGTGAAAGAAAGTGTCACACTTCTGGTGGGATAACGCGTCACACCTTTTCAAATGTCTCGATGGATAAAATTATGCAAGAAACTACTATTGTATCATGGCTCTCTCAAATGGATGTTCCTCGTGATGCTTTTAATATTGTAGTGGCAAAAGTCTTGGAATGTGCTCGTGATATGGTTAATAAGACTCATAAGAATTTAAAGGTACTTTCTATTCAAGTCGATATTGAAGTTAAAAGAACCCGGGAAGAAGATGAAAGCAATGATGATGAAAGTGGTGAAAGTAGTGAAAGTGATGAAGAAGACGATGTAAGTTTTTTTTGGTTACATGAAGACGATGAAAGTGGTGAAACTAGTGAAATTAATGGACAGAGTGATGAAATTAGTGAAATTAGTGAAAGTGATGAATCTGACGAAGATGATGTGTTGGTTCATGCGTTAAAGTCATCTATTGAGGAATTGGAGACGGTGATTGGTGAAACAGAGAAAAAATGTGATATTTGTTATGAAAATTATACCATTGGTATTCGTATGCCATGTTTGCACATGCTTCATAGGGAATGCATTCTTGATTGGTTAGAGAGGACCAATTCTTGTCCTTACTGTAGGTTTCAACTGCCCACAAATAAGTGA 768 0.362 MEEYDCHAYPDNKSNNFDTENISSCPHGHDKYFNVEFGCINSSTLCGERKCHTSGGITRHTFSNVSMDKIMQETTIVSWLSQMDVPRDAFNIVVAKVLECARDMVNKTHKNLKVLSIQVDIEVKRTREEDESNDDESGESSESDEEDDVSFFWLHEDDESGETSEINGQSDEISEISESDESDEDDVLVHALKSSIEELETVIGETEKKCDICYENYTIGIRMPCLHMLHRECILDWLERTNSCPYCRFQLPTNK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00585 255 Pfam Ring finger domain 209 248 IPR001841 -
Trre5g00585 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 255 IPR013083 -
Trre5g00585 255 MobiDBLite consensus disorder prediction 126 184 - -
Trre5g00585 255 SMART ring_2 210 247 IPR001841 -
Trre5g00585 255 MobiDBLite consensus disorder prediction 132 153 - -
Trre5g00585 255 SUPERFAMILY RING/U-box 209 253 - -
Trre5g00585 255 ProSiteProfiles Zinc finger RING-type profile. 210 248 IPR001841 -
Trre5g00585 255 Coils Coil 189 209 - -
Trre5g00585 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 133 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00585 Trre-Chr5 3789427 3790194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00585 156 252 C3H Transcription Factor Family AT1G14200 32.174 8.79e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00585 - - cam:101499491 192.586