Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00560 ATGGCTGCAGCTTTGATCGGAGGTGCATTTCTGTCTGCTTCTGTTCAAACCTTAATGGACAAACTAACTTCAACTGAGTTTCGTGATTATATCACCAACACGAAGCTGAATGAATCATTGATCGAAGAGATGGAAACAACACTGCTAGCTCTTGATATTGTACTGGATGATGCAGAGGAGAAGCAGATCCTCAAACCCAAAATCAAACAATGGCTGGATCGGCTGAAAGATGCAATCTTTGATGCGGAGGATTTGCTTAATCAAATCAGCTACAATACCTTGAGATGCAGGATGGAGAATAAACAAGTGGAACACATTATGGGTCGGTTTCAAAACTTGCTTTCAACTACAAACTCAAATGGAGAGATCAATTCTGAAATGGAGAAGATTTGTAAAAGGCTGCAAACATTTGTCCAGCAGAGTACCCTCCTTGGCTTGCAAACAACTGTAAGTGGTAGAGTTTCTCATAGAACACCTTCAAGTTCAGTGGGAAATGAATCTGTCATGGTGGGTAGGAAGGATGAAAAAGAGACAATAATGAACATGTTGCTATCACAGAGGGACACAGCCGGTAACAAGATAGGTGTTGTTGCAATTTTGGGCATGGGAGGCTTAGGAAAAACTACCCTTGCCCAACATCTTTACAACGATAAAGAAGTTCAGCAACATTTTGATATGAAGGCCTGGGCTTGTGTATCTGAGGATTTTGATACTATGAGAGTAACTAAGTCTCTCCTTGAATCTGCCACTTCCAGAACTTGGGAAAACACTAATCTTGATTTCCTTCGAGTTGAATTAAAGAAAATCTCGAGGGACAAAAGATTTTTGTTTGTGTTGGATGATTTGTGGAATGAAAATTACAATGATTGGGATGAGCTAGTAAGTCCCTTCATTGATGGAAAACCCGGGAGCATGGTGATTGTAACAACGCGTCAAGAAAAAGTTGCACAGGTGGCACACACATTTCCTATTCAAAAATTAGAACCACTATCAAATGAAGAATGTTGGTCTTTACTCTCAAAGCATGCATTGGGAAGTGATGAGTTTCATGACAGTAAAAACACAACCCTTGAAGAAATTGGCCGGAAGATTGCAAAAAGGTGTGGTGGACTACCAATAGCTGCTAAAACACTAGGAGGACTTCTACGTTCAAAGGTAGACACAAATGAGTGGACTTCAATTTTGAACAGCAATGTATGGGACTTACCAAATGATAATATTCTTCCTGCTTTGCATTTGAGTTATCAATATCTTCCCTCTCATTTGAAAAGATGTTTTGCATATTGTTCAATTTTTCCAAAGGATTGCCCACTTGATAGAAAGAAATTGATTTTGTTATGGATGGCAGAGGGCTTCCTTGATTGTCATCAAGGGGGAAAAGTGATGGAGGAATTAGGTGATGATTGCTTTGTTGAATTGATATCCAGATCCTTAATTCAACAATCAAATGATGATGCTCATGGAAAAATCTTTATCATGCATGACCTTGTCAACGATTTAGCTACAGTCGTATCTGGGAAAAGTTGTTGCAGGTTTGATTGTGGTGAGATCTCTGAAAATGTTCGTCATATCTCATTTAACCAGAAACAATATGACATTTTCAAAAAGTTTGAGAATATCTACAATTTCAAATTGTTGCGAAGCTTCCTATCACTTCCCCACAAGTATTCTTACAATCACATATCCATAAAGGTGGTTGATGATTTGCTACCAACACTCAAAAGGTTGCGTGTGTTATCGCTGTCAGATTATAGAAACATCACAAAGCTTCCGGATACAATTGGCAATTTACTGCAATTGCGGTATCTAGATCTCTCCAACACTGAAATCAAAAGCTTGCCAGATACAACATGTAACCTTTACTATTTGCAGACATTGATTTTATCAAGTTGTTGGGAACTAACTGAATTGCCAGTGCATATGGGAAATTTAATCAATTTACGTCACCTTGATATAACAAATACAGAGATAAAGGAGTTGCCTATGGAAATTGCAAAACTAGAAAACCTCCAAACTTTGACAGTTTTTGTAGGGTTAAGTATCAAAGAGCTAAGTAAATTCCCAAACCTACAGGGAAAACTTACCGTCAAGAACCTGCATAGTGTTGTTGATGCCAGGGAGGCAGAAGAAGCCAACTTGAAAAGCAAAGAGAAAATTGAGGAGTTAGAGCTGTTATGGGGCAAACAAAGTGAAGACTCGGAAAAAGTAAGAGATGAGCTTGCTATGTTGCAACCACCAATTAACTTGAAAAGCCTGAACATTGACTTGTACGGCGGGACACGTTTTCCGAGTTGGTTGGGAAATTCGTCGTTTTCTAATTTGGTGTCCCTTCGCATCAATAATTGTGAACATTGCATCACACTTCCGCCGCTAGGGCAGCTTCCTTCTCTCAAAGACCTAGAAATACATGGTATGAAGAATATGGATACAATTGGGCTAGAGTTCTATTGTGCCCAGGGAGGAGAATGTTCCAATTCTTCCTTCCAACCATTTCTATCCCTTGAGCGGATAAAATTTCACAGCATGCCAAGTTGGAAAGAATGGCTTCAGATTGAAGGCATAAACTTTGCTTTTCCTCAACTTAGAACTATGGAGTTACATAACTGTCCAGAACTAAGAGGACATTTGCCTAGCCACCTTCCTTGTATAGAAGAAATTGTAATAGATGGTTGTCCTCATCTATTGGAAACACCTTCCACTTTGCATTGGTTGTCTTCAATAAAGAAAATTATTATCAATAGGTTTGGTGAAAGGACTTCATTGTCATGGTTTGAGAGTGATTCTCCAAGTACGATGCAAGATGTAATGATTGTAATGTGTACTACTCTATTATATGTGCCAAAATTGATTCTGAGAAGCAATTGTCTTCAACACTTGAAACTCCATTATCTTCCTTCTCTCATTGCATTTCCCTCAAGTGGTCTACCCACTTCATTGCAATCACTTATTATTGGAAACTGTAAGAATTTATCCTTCCTTCCTCCGGAAACGTGGAGCAATTACACATCGCTTGTGAGTCTTGAGTTATGGAGAAGCTGTGACGAACTTACATCCTTTCCACTTGATGGTTTCCCTGCACTCCAAACACTTAAAATAGATGAATGTAAGAGTCTGGATTCCATTTATATTTTAGAAAGTCCTTCGCGTCAGCCTTCAAGCCTCAAATCACTTAAGATTAAGTTCCACAATTCAATTGGATTGATTAAAGTCAAGCTTAAGATGGACACGCTCACTTCTTTGGAAGTGTTGCGACTACAATGTGAAGAGGTGTCATTTTGTGAAGGTGTTTGTCTACCTCCTAATTTACAATCAATATATCTGAATGTGAATCAAAGAACAACGCCGCCTATAACAGAATGGGGCCTTCAAGGCCTAACAGCTCTTTCAAGATTGAGTATTGAAGCAGATGATGAAGATGATGAAGATATAATTAACACCTTGATGAAGGAGTCGTTGCTACCCATCTCCCTTGTTGATCTGACTATCATCAAAAATAATAAAATGAAGGCCTTTGATGTAAGTGGGCTTCGACACCTCTCCTCTCTCAAATCTCTTGAATTTATATTCTGTAAAGAGCTTGAGTCAATGCCAGAAAACTGCCTGCCTTCCTCGCTGAAATCACTTTCCTTTTACGAATGTAAACAGCTTGAGTCATTACCAGAAAATTGCCTCCCTTCTTCGCTGAAAGAACTTCTATTTTGTGGTTGTAAAAAGCTTGAGTCATTACCAGAAGACAACCTTCCTCGCTCTCTTGAGATGCTTACCATTCATCAATGCCCATTGTTAGAAGAAAGGAGATCAAGGCCTGAGTGGATGAATTGA 3822 0.3901 MAAALIGGAFLSASVQTLMDKLTSTEFRDYITNTKLNESLIEEMETTLLALDIVLDDAEEKQILKPKIKQWLDRLKDAIFDAEDLLNQISYNTLRCRMENKQVEHIMGRFQNLLSTTNSNGEINSEMEKICKRLQTFVQQSTLLGLQTTVSGRVSHRTPSSSVGNESVMVGRKDEKETIMNMLLSQRDTAGNKIGVVAILGMGGLGKTTLAQHLYNDKEVQQHFDMKAWACVSEDFDTMRVTKSLLESATSRTWENTNLDFLRVELKKISRDKRFLFVLDDLWNENYNDWDELVSPFIDGKPGSMVIVTTRQEKVAQVAHTFPIQKLEPLSNEECWSLLSKHALGSDEFHDSKNTTLEEIGRKIAKRCGGLPIAAKTLGGLLRSKVDTNEWTSILNSNVWDLPNDNILPALHLSYQYLPSHLKRCFAYCSIFPKDCPLDRKKLILLWMAEGFLDCHQGGKVMEELGDDCFVELISRSLIQQSNDDAHGKIFIMHDLVNDLATVVSGKSCCRFDCGEISENVRHISFNQKQYDIFKKFENIYNFKLLRSFLSLPHKYSYNHISIKVVDDLLPTLKRLRVLSLSDYRNITKLPDTIGNLLQLRYLDLSNTEIKSLPDTTCNLYYLQTLILSSCWELTELPVHMGNLINLRHLDITNTEIKELPMEIAKLENLQTLTVFVGLSIKELSKFPNLQGKLTVKNLHSVVDAREAEEANLKSKEKIEELELLWGKQSEDSEKVRDELAMLQPPINLKSLNIDLYGGTRFPSWLGNSSFSNLVSLRINNCEHCITLPPLGQLPSLKDLEIHGMKNMDTIGLEFYCAQGGECSNSSFQPFLSLERIKFHSMPSWKEWLQIEGINFAFPQLRTMELHNCPELRGHLPSHLPCIEEIVIDGCPHLLETPSTLHWLSSIKKIIINRFGERTSLSWFESDSPSTMQDVMIVMCTTLLYVPKLILRSNCLQHLKLHYLPSLIAFPSSGLPTSLQSLIIGNCKNLSFLPPETWSNYTSLVSLELWRSCDELTSFPLDGFPALQTLKIDECKSLDSIYILESPSRQPSSLKSLKIKFHNSIGLIKVKLKMDTLTSLEVLRLQCEEVSFCEGVCLPPNLQSIYLNVNQRTTPPITEWGLQGLTALSRLSIEADDEDDEDIINTLMKESLLPISLVDLTIIKNNKMKAFDVSGLRHLSSLKSLEFIFCKELESMPENCLPSSLKSLSFYECKQLESLPENCLPSSLKELLFCGCKKLESLPEDNLPRSLEMLTIHQCPLLEERRSRPEWMN 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00560 1273 FunFam Probable disease resistance protein At1g63360 415 503 - -
Trre5g00560 1273 Pfam FNIP Repeat 1198 1233 IPR008615 -
Trre5g00560 1273 SUPERFAMILY L domain-like 493 921 - -
Trre5g00560 1273 Coils Coil 41 61 - -
Trre5g00560 1273 Coils Coil 705 725 - -
Trre5g00560 1273 Gene3D Ribonuclease Inhibitor 939 1145 IPR032675 -
Trre5g00560 1273 Gene3D - 152 322 IPR027417 -
Trre5g00560 1273 Gene3D - 14 124 - -
Trre5g00560 1273 FunFam Probable disease resistance protein At1g61300 153 321 - -
Trre5g00560 1273 Pfam NB-ARC domain 173 396 IPR002182 GO:0043531
Trre5g00560 1273 Gene3D - 414 503 IPR036388 -
Trre5g00560 1273 Gene3D Ribonuclease Inhibitor 535 925 IPR032675 -
Trre5g00560 1273 Gene3D Ribonuclease Inhibitor 1146 1271 IPR032675 -
Trre5g00560 1273 PRINTS Disease resistance protein signature 269 283 - -
Trre5g00560 1273 PRINTS Disease resistance protein signature 595 611 - -
Trre5g00560 1273 PRINTS Disease resistance protein signature 196 211 - -
Trre5g00560 1273 PRINTS Disease resistance protein signature 368 382 - -
Trre5g00560 1273 Pfam Rx N-terminal domain 10 103 IPR041118 -
Trre5g00560 1273 PANTHER DISEASE RESISTANCE PROTEIN RP 67 851 IPR044974 GO:0006952
Trre5g00560 1273 ProSiteProfiles Leucine-rich repeat profile. 599 620 IPR001611 GO:0005515
Trre5g00560 1273 Gene3D - 329 413 IPR042197 -
Trre5g00560 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 429 IPR027417 -
Trre5g00560 1273 SUPERFAMILY L domain-like 943 1266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00560 Trre-Chr5 3564856 3569820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00560 194 811 WRKY Transcription Factor Family AT5G45050 22.157 1.67e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00560 - - tpra:123915821 1921.75