Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00557 ATGGCGGAATCTCGCCCACCTAAGCGCCACAAAGTTAGCAGGGGTGATGATGATTATATGCCTGGAAACATTCTAGAGATCGAGCTTTATAATTTCATGACATTTGATTACTTAAAATGTAAACCTGGTCCTCGGTTGAATCTCGTAATTGGGCCTAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGTCTCTGTGGAGAACCCCAGTTGCTTGGGCGAGCCACGAGTATCGGGGCATATGTGAAGAGGGGGGAAGAATCTGGTCACATTAAGATTACCTTGAGAGGAGACCAGAAGGACGAGCACATTACGATTATGCGTAAAATAAATACTAGCAACAAGTCTGAATGGTTTTTCAATGGAAATATTGTGGCCAAAAAGGATTTGGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCGCAAGATAGGGTCTGTGAGTTTGCAAAGTTAACTCCTATTCAGCTGTTGGAGGAGACTGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGTGCATTAAAGCATGTTGAGTTGTCTCTTGAGAAAAATGAAGGAACTTTAAATCAGTTGAAGGAACATAATGCTGAATTAGAGAAGGATGTTGTACGTGTTCGTCAAAGAGATGAACTCCTTGCCAAGGCCGAATCAATGAAAAAGAAATTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATATCGTGAAGCTAAGGAGCGTGAGAAGATTGCATCAAAGGAGTTGGAGAAAGCAGCAAAATTATTAAATGAACTTAAAGAGCCCATTAAGAAACAAAAGGATGAAAAAACTGCATTAGAAGCAAAATGCAAAAAGGTTAACAACCGACTCGATGAGAATACCAAGAAGAGAATGGAACTTATGGAGAAAGAGAGCCGATTGGAAGTGGAATTACAAGGAAAGTACAAAGAGATGGACGAGTTGAAGAGGCAGGAAGAAACTCGGCAACAGAAATTTATCAACGCTAGGGAGGAACTTGCTGCTGCTGAACTTGAACTTAAGAATCTAGACCCTTTTGTACCTCCCAAGGATGAGCTTCAAAGACTGAGAGAAGAAATACTGGAGTTAGATAGTTCTGCTAGTCAAGCAAGAGATAGTAAGTTACAAACAGAAAACGAAATAAAGTTTAAAAGGTCGTCCTTGGCAAGGTGTAGAGAAAGGTTGAACGAAATGAGTAATAAAAGTACCAAGTGTTTGCATGCATTGCAAAGATTTGGGGTTGAAAAAATTTTTGACGCTTATCATTGGGTCCAAGCACATCGCCATCAATTTAACAAGGAAGTTTATGGTCCAGTATTAGTAGAGGTGAATGTCTCAGATCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGCATGGTACACTTGGAAGTCTTTCATAACACAGGATCCTCGTGATCGGGACTTTTTGGTGAACAACCTACGGAATTTTGATGTACCAGTTTTAAATTATACTGGTCATGATAGCCGACAAAGAGAGCCGCCTCCTGAAATATCTCCCGATATGCGTGCTCTTGGTGTCTACTCCCGTTTGGACCAAATTTTTGATGCTCCTGTTGCTGTCAAGGAGGTTTTGATTAGCCAATATAATCTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCTGACGAGGTCCCAAAATTAGGAATTACTAGTTTATGGACACCAGAAAACCACTATCACTGGTCTAAGTCTAGATATGGAAATCATGTCTCGGCAATGGTTGAACAAGTGGATCGCCCAAAACTTCTGTTGAATAATTTAAATGTGAGGGACATTGAGAATCTGAGGTCCCAGGAAAGGGAGCTTCAAGAACAAATTGCTTCCTCGGAGGAAATTTTCAAACGGTTTCAAGACGAGGAAAGAAGCTTTATGAATCAGGCTGCTAATCTTCGTAAACAGAGTGAGGCCATTCGTAGGGAAGCACAAATAAAGAAACAAGAGCGAGAAGCAATAAATAGGCGTATTGAGCAAAAGAAAGCGAAACTGAAATTGATGGAGGAGCAAGAGGATTTAGACACGGAGTTAGCAAAGCTTGGTGATCAGGCAACAAAATGTAACATTCAGCGTTTCCATAATGCAAATAAAATTAAGGATCTTCTTGTTGAAGCTGCGGGTTACAGACGAAATTATGTTGAACAACGTATGGCTTGCATTGAATTTGATGCAAAGATTAGAGAAGTGGAAGCAAATCTGAAGCAGCATGAAGATTTAGCTCTGCAGGCATCATTGCAATTTAATAACTCTAAGAAAGAGGCTGAAGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAAGTCAATTGCTCGGCTTACACCTAACCTAGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGATACAACTTCTCAAGCCAATGCAATCCTTTTTGTCAATAGTAACATATTGGAACAATATGAGATACGTCAAAGACAGATAGAAGATCTTGCAACAAAACTTGATGCAGACAAGAAGGAATCAAGAAGGTTACTAGCTGAACTGGATAACGTTAAGGGAAAATGGCTTCCAACACTGAGAAACCTTGTGGCCCAGATAAATGAAACTTTCAGTCAAAACTTTCAACAGATGGCTGTTGCCGGAGAAGTTTCACTAGATGAGCATGATATGGACTTTGATCAATATGGAATACATATAAAAGTCAAATTCAGAGAAAATGGACACCTTGAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAATCAAGGTATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTGCTTACCCCAAAACTGTTGTCAGATCTCCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATCGAAGAACCATCAAAGGTCTGGACTACTGGTGATCGGTGGAGTATTATCTCTGGGCATGTTGGAGAGACCCGATGTTAA 3162 0.4013 MAESRPPKRHKVSRGDDDYMPGNILEIELYNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGHIKITLRGDQKDEHITIMRKINTSNKSEWFFNGNIVAKKDLAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPIQLLEETEKAVGDPQLPEQHRALIDKSRALKHVELSLEKNEGTLNQLKEHNAELEKDVVRVRQRDELLAKAESMKKKLPWLKYDMKQAEYREAKEREKIASKELEKAAKLLNELKEPIKKQKDEKTALEAKCKKVNNRLDENTKKRMELMEKESRLEVELQGKYKEMDELKRQEETRQQKFINAREELAAAELELKNLDPFVPPKDELQRLREEILELDSSASQARDSKLQTENEIKFKRSSLARCRERLNEMSNKSTKCLHALQRFGVEKIFDAYHWVQAHRHQFNKEVYGPVLVEVNVSDQSHAGYLEGQVAWYTWKSFITQDPRDRDFLVNNLRNFDVPVLNYTGHDSRQREPPPEISPDMRALGVYSRLDQIFDAPVAVKEVLISQYNLDHSFIGSKETDQKADEVPKLGITSLWTPENHYHWSKSRYGNHVSAMVEQVDRPKLLLNNLNVRDIENLRSQERELQEQIASSEEIFKRFQDEERSFMNQAANLRKQSEAIRREAQIKKQEREAINRRIEQKKAKLKLMEEQEDLDTELAKLGDQATKCNIQRFHNANKIKDLLVEAAGYRRNYVEQRMACIEFDAKIREVEANLKQHEDLALQASLQFNNSKKEAEECRQKLTDLLNYAKSIARLTPNLEKEFLEMPTTIEELEAAIQDTTSQANAILFVNSNILEQYEIRQRQIEDLATKLDADKKESRRLLAELDNVKGKWLPTLRNLVAQINETFSQNFQQMAVAGEVSLDEHDMDFDQYGIHIKVKFRENGHLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLSDLQYSEACSILNVMNGPWIEEPSKVWTTGDRWSIISGHVGETRC 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00557 1053 Coils Coil 201 228 - -
Trre5g00557 1053 Coils Coil 747 774 - -
Trre5g00557 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 279 IPR027417 -
Trre5g00557 1053 Coils Coil 247 351 - -
Trre5g00557 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1046 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Trre5g00557 1053 Gene3D - 847 1022 IPR027417 -
Trre5g00557 1053 FunFam Structural maintenance of chromosomes 5 849 1020 - -
Trre5g00557 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 994 IPR027417 -
Trre5g00557 1053 Gene3D - 23 212 IPR027417 -
Trre5g00557 1053 Coils Coil 657 711 - -
Trre5g00557 1053 Coils Coil 372 392 - -
Trre5g00557 1053 Coils Coil 622 649 - -
Trre5g00557 1053 Coils Coil 842 872 - -
Trre5g00557 1053 Pfam RecF/RecN/SMC N terminal domain 24 994 IPR003395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00557 Trre-Chr5 3525349 3541327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00557 1 1042 Structural Maintenance of Chromosomes family AT5G15920 61.324 0.0 1278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00557 K22803 - gmx:100778678 1639.78