Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00542 ATGGCTCTCTATTCCAAAACACAACCATACACAATAACCACATTCATTTTCTTCTTCCTTCTACTCACTCTTCCACACTCCACTTCTGTTTCCACTGATTTTGTTGCTCCAACCTGTCTCCGAGTTACTCCCGCGAAATTTGTTGATTCTGCCAAAGAAGTTGTCACCATTCTAGAACGCGTCACCTCCATTTTATCAGGCTTCAACGTCTTCGGCCACTCTAGTCTCTCAAACGCCATTTCCGATTGCCTTGAATTACTCGACATGTCCGCCGAACAACTTAGTTGGGCTATGTCCGCATCGCAAAATCCCAAAGGGAAGGATAACAGTACTGGAAATCTAAGCTCTGACCTAAGAACATGGCTGAGTGCTGTTCTTGTGAATCCAGACACATGTATAGATGGATTAGAAGGTACAGTTGTGAAGGGTCTTGTATCAAGTGCTCTTGATCTTGTAATGTCCTTAGTGAAGACACTTCTAGCTGAAGTAGATCCTAGCAATGATCAATTCATAACTTCTACCGGTTCGGATCAATTTCCGTCTTGGATTAATGACGAGGACAAGAAGCTGTTAAAAGAAAATAGAGTGGCTGCTGATGCTGTTGTGGCGGCCGATGGAAGTGGGGATTACCGGAAGGTGACGGATGCGATATCGGCAGCACCTGAATATAGCATGAAAAGATATGTTATATATGTAAAGAAAGGTGTTTATCTTGAAAATGTTGAGATTAGTAAGAAAAAATGGAATATTATGATGATCGGTGATGGTATCGATGCTACTATTATCTCCGGTGGTCGGAATAAAGTCGACGGTTGGACTACATTCCGATCAGCTACCTTTGCGGTAAATGGTAGAGGGTTTATAGCACGGGATATTTCATTTAAGAACACAGCTGGCCCTGAGAAGCATCAAGCTGTGGCATTAAGATCAGACTCTGACCTCTCTGTATTTTATCGCTGTGGGATATTCGGTTATCAAGATAGCCTATATCCCCACTCTATGCGTCAATTCTACAGAGAGTGCAGAATCGCTGGTACAGTGGATTTCATTTTTGGAGATGCCACAGCTGTGTTCCAGAATTGCCAAATACTAGCCAAGAAAGGAAGTCCTGGACAAAAAAACACTATTACTGCTCAAGGACGAAAAGACCCGAATCAACCAACTGGTTTTTCCTTCCAATTTTGCAACATTTCAGCAGACTCTGATCTTCTACCATCAGTTGGAACCATCCAAACATACCTAGGAAGACCTTGGAAGATTTATTCGAGAACAATTTTCATGCAATCCTACTTTAGTAACATAATAAGTCCGGAAGGGTGGTTAGAGATGAACGGAACGTTTGCTTTGGACACATTAACTTATGGTGAGTACATGAACACTGGACCTGGTGCTGGGGTAGCTAGCCGAGTGAAATGGCCAGGGTATCGTGTATTAAATGATTCGAGGGAGGCAGAAAAGTTTACTGTGGCTCAATTTATTGAAGGGAATCTGTGGTTACCTTCCACTGGTGTTGCTTACATTGCAGGTTTGAGAGTGTAA 1539 0.4263 MALYSKTQPYTITTFIFFFLLLTLPHSTSVSTDFVAPTCLRVTPAKFVDSAKEVVTILERVTSILSGFNVFGHSSLSNAISDCLELLDMSAEQLSWAMSASQNPKGKDNSTGNLSSDLRTWLSAVLVNPDTCIDGLEGTVVKGLVSSALDLVMSLVKTLLAEVDPSNDQFITSTGSDQFPSWINDEDKKLLKENRVAADAVVAADGSGDYRKVTDAISAAPEYSMKRYVIYVKKGVYLENVEISKKKWNIMMIGDGIDATIISGGRNKVDGWTTFRSATFAVNGRGFIARDISFKNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYPHSMRQFYRECRIAGTVDFIFGDATAVFQNCQILAKKGSPGQKNTITAQGRKDPNQPTGFSFQFCNISADSDLLPSVGTIQTYLGRPWKIYSRTIFMQSYFSNIISPEGWLEMNGTFALDTLTYGEYMNTGPGAGVASRVKWPGYRVLNDSREAEKFTVAQFIEGNLWLPSTGVAYIAGLRV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00542 512 SUPERFAMILY Pectin lyase-like 196 509 IPR011050 -
Trre5g00542 512 Pfam Plant invertase/pectin methylesterase inhibitor 69 148 IPR006501 GO:0004857
Trre5g00542 512 FunFam Pectinesterase 193 510 - -
Trre5g00542 512 PANTHER PECTINESTERASE 67 500 - -
Trre5g00542 512 Pfam Pectinesterase 199 496 IPR000070 GO:0030599|GO:0042545
Trre5g00542 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 164 IPR035513 -
Trre5g00542 512 CDD PMEI-like_4 26 163 - -
Trre5g00542 512 ProSitePatterns Pectinesterase signature 2. 343 352 IPR033131 -
Trre5g00542 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 157 IPR035513 -
Trre5g00542 512 Gene3D - 193 510 IPR012334 -
Trre5g00542 512 SMART PMEI_2 25 151 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00542 Trre-Chr5 3448061 3451002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00542 15 510 Carbohydrate Esterase AT3G43270 62.062 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00542 K01051 - gmx:100814987 704.131