Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00541 ATGGTATGCATAAGAAAAGCCAACGTTAACGACCTACTCGCGATGCAAGCGTGTAACCTTTTCTGTTTACCGGAGAATTACCAGATGAAGTATTATCTTTATCATATCCTCTCTTGGCCTCAGCTTCTTTACGTCGCCGAAGATTACAACGGCCGTATCGTCGGTTACGTTCTCGCTAAGATGGAAGAGGAAACGAATGAGTGTCATGGTCATATAACTTCTCTTGCTGTTCTTCGTACTCATAGGAAGCTTGGTATTGCTACTAAGCTTATGACGGCTGCACAGAATGCTATGGAACAGGTGTTTGGTGCCGAGTATGTGTCGCTGCACGTCAGGAAGAGCAACCGTGCAGCTTTTAATTTGTACACAGAGACCTTGGGGTACAAGATTCATGATGTGGAGGCCAAGTATTATGCTGATGGGGAGGATGCTTACGACATGAGGAAGCAACTCAAGGGGAAACAGTTGCATCCGCCGCAGCATCACCACCATCACCACCACCATGGCGGTGGCTGTTGTTCTGGGGAGACCAAGGGGAATGCAAAAGCCACCTGA 555 0.4775 MVCIRKANVNDLLAMQACNLFCLPENYQMKYYLYHILSWPQLLYVAEDYNGRIVGYVLAKMEEETNECHGHITSLAVLRTHRKLGIATKLMTAAQNAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKIHDVEAKYYADGEDAYDMRKQLKGKQLHPPQHHHHHHHHGGGCCSGETKGNAKAT 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00541 184 Pfam Acetyltransferase (GNAT) family 39 128 IPR000182 GO:0016747
Trre5g00541 184 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1 151 IPR016181 -
Trre5g00541 184 PANTHER N-TERMINAL ACETYLTRANSFERASE 1 176 IPR045047 GO:0004596|GO:0006474|GO:0031415
Trre5g00541 184 CDD NAT_SF 43 110 - -
Trre5g00541 184 MobiDBLite consensus disorder prediction 154 169 - -
Trre5g00541 184 MobiDBLite consensus disorder prediction 152 184 - -
Trre5g00541 184 Gene3D - 2 175 - -
Trre5g00541 184 FunFam N-alpha-acetyltransferase daf-31-like 2 172 - -
Trre5g00541 184 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 2 152 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00541 Trre-Chr5 3443997 3447184 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Trre5g00541 Acetyltransf_1 1.5e-16 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00541 K20791 - gmx:100810038 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00541 5 3443997 3447184 Trre5g00541 5 3443997 3447184 ECH