Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00539 ATGAACAAATCAAGTTGTTCATTGATTCTTCTATCCTTTCTCATTGTAACTCTCTTTGTGGCTGAAATCCATGGAAGCAAACAAAGTAGAGCTCTTGACAAATTACAAAAGTCAAAGTTCAATGCAAATTCACAAATTGACATGAGTCATTTTAAAGCACAAAAGAATATTTTGCTTGATGCAATGATTCATTCTCAAGATGGTATGAAAGAAAAGGACAGAATTGAGAAGCTACCAGGGCAACCAAATGTGAAATTCTCTCAATATGGAGGGTATGTCACTGTGGACAAATTAGCAGGACGTGCTTTTTACTATTACTTTGTGGAAGCTGCTCATTCTAAAGAAACATTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGCTCATCTCTTGCCTATGGAGCAATGGAAGAACTTGGGCCCTTCCGTGTGAACAGTGATGGAAAAACCCTTCACAAAAATAACTATTCATGGAACTATGCTGCAAATGTATTGTTCCTTGAGTCACCAGCTGGGGTAGGATTTTCTTACTCAAACAAATCATCTGATTATGACATCAATGGAGATAGAAAAACAGCTGCAGATAACTATGTATTTTTAGTGAATTGGTTAGAGAGATTTCCTGAATATAAGAATAGAGATTTCTACATTGCTGGTGAAAGTTATGCTGGTCATTATGCCCCTCAACTTGCACACAATATTCTCTACCATAACAAAAAGGCTAATAGAACAATTGTCAACCTCAAAGGAATTATGATTGGAAATGCAGTGATCAATGATGACACAGATAATCAAGGAATGTATGATTACCTTGCTAGCCACGCAATCATATCAGACCAAGCAGCATATAATATCAACAAATTTTGTAATTTCTCATCAATTTCTAATCAAACTACTGAATGCAATGAAGCAGCAAGTGAAGTTTATAAGAACACATTGTTCCTTGACGTGTACAACATTTATGCTCCAATATGCACTAATCACAACCTCACTACTCGTCCCAAGAAGATCTCGGTTGTTCTTGATCCTTGCAGTGATGATTATGTACAAGCATATTTGAATAGGGGTGATGTTCAAGAGGCCCTCCATGCCAATGTCACAAAACTCAAATATGATTGGGAGCCTTGTAGTAATATCATTTCAAAGTGGGGGGATAGTCCTTCAACAATCATTCCCCTTTTACATGAATTCCTCAATAATGGACTAAGGGTGTGGATTTTTAGTGGTGATATAGATGCAAGGGTGCCTGTTACTTCAACCAAATATTCCATTAAAAAAATGAATCTTCCTATTGACACTACTTGGTATCCTTGGTTCATAAATGGACAGGTTGGTGGCTATGCTGAAGTATATAAAGGAGGTTTAACTTTTGCCACAGTGAGAGAAGCAGGACATCAAGTACCAAGCTACCAACCAGCAAGAGCCCTCTCTCTAATCAAGCATTTCTTAAATGGAACTCCTCTTCCTAATACTCAAAGATTATCAGACTAA 1494 0.3742 MNKSSCSLILLSFLIVTLFVAEIHGSKQSRALDKLQKSKFNANSQIDMSHFKAQKNILLDAMIHSQDGMKEKDRIEKLPGQPNVKFSQYGGYVTVDKLAGRAFYYYFVEAAHSKETLPLLLWLNGGPGCSSLAYGAMEELGPFRVNSDGKTLHKNNYSWNYAANVLFLESPAGVGFSYSNKSSDYDINGDRKTAADNYVFLVNWLERFPEYKNRDFYIAGESYAGHYAPQLAHNILYHNKKANRTIVNLKGIMIGNAVINDDTDNQGMYDYLASHAIISDQAAYNINKFCNFSSISNQTTECNEAASEVYKNTLFLDVYNIYAPICTNHNLTTRPKKISVVLDPCSDDYVQAYLNRGDVQEALHANVTKLKYDWEPCSNIISKWGDSPSTIIPLLHEFLNNGLRVWIFSGDIDARVPVTSTKYSIKKMNLPIDTTWYPWFINGQVGGYAEVYKGGLTFATVREAGHQVPSYQPARALSLIKHFLNGTPLPNTQRLSD 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00539 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Trre5g00539 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Trre5g00539 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Trre5g00539 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Trre5g00539 497 FunFam Carboxypeptidase 391 486 - -
Trre5g00539 497 SUPERFAMILY alpha/beta-Hydrolases 76 490 IPR029058 -
Trre5g00539 497 Pfam Serine carboxypeptidase 80 486 IPR001563 GO:0004185|GO:0006508
Trre5g00539 497 FunFam Carboxypeptidase 69 328 - -
Trre5g00539 497 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Trre5g00539 497 Gene3D - 345 381 - -
Trre5g00539 497 Gene3D alpha/beta hydrolase 69 328 IPR029058 -
Trre5g00539 497 Gene3D - 391 486 - -
Trre5g00539 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 74 473 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00539 Trre-Chr5 3422403 3429361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00539 353 489 Calmodulin-binding Proteins AT2G22960 33.577 2.43e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00539 K16297 - gmx:100783864 746.888