Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00529 ATGGATGATGTAAGTTCTGAGGTTTCTGATAAGCTTTCAGATAATGTTCCATTTTCAAATCCAGAATCATGTAGCAATTTTCAAGGTTCAACATCTTTGAACACAGTTACTGAATTGTCTAAGAACACTACAAAAACATGCACTCACACTCACACTTGTAATCCACCTGGTCCTGATGATGTTATTCATACACACACATGTTTTCACACACATACTCAAGTTTTTGCATCTGAAGATGACACAAATTCAAGGCCAAAAAGGACTTTTGGCAATAGAGAAGCTGTTAAAAAGTATAGGGAGAAGAAAAAGGCACAAACAGCTTATTTAGAGGAAGAAGTTAAGAAGTTGAAACTGGTGAATCAACAACTATTGAGGAAATTACAAGGGCAGGCACTACTTGAAGCAGAATTGTTAAGGTTAAGGAAAGTTTTTGTACAACTTAAGGGAAAAATTGACAGTGAATTAGGTTCTTTCCCTTTTCAAAAGCAGTGTTTCTCTTCTAGTATTTACAAAGGAGATGCTAATTTTGTTTCTTCTTCTCAACCAGCTGATCTTGAGCTATGTAGCACCGAAACTTCAGATTGA 585 0.3573 MDDVSSEVSDKLSDNVPFSNPESCSNFQGSTSLNTVTELSKNTTKTCTHTHTCNPPGPDDVIHTHTCFHTHTQVFASEDDTNSRPKRTFGNREAVKKYREKKKAQTAYLEEEVKKLKLVNQQLLRKLQGQALLEAELLRLRKVFVQLKGKIDSELGSFPFQKQCFSSSIYKGDANFVSSSQPADLELCSTETSD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00529 194 PANTHER CCAAT/ENHANCER BINDING PROTEIN 29 159 IPR031106 GO:0003700|GO:0006351
Trre5g00529 194 SMART brlzneu 78 146 IPR004827 GO:0003700|GO:0006355
Trre5g00529 194 SUPERFAMILY Leucine zipper domain 85 128 IPR046347 GO:0003700|GO:0006355
Trre5g00529 194 MobiDBLite consensus disorder prediction 10 30 - -
Trre5g00529 194 Gene3D - 71 148 - -
Trre5g00529 194 Pfam Basic region leucine zipper 81 134 IPR004827 GO:0003700|GO:0006355
Trre5g00529 194 MobiDBLite consensus disorder prediction 1 30 - -
Trre5g00529 194 CDD bZIP 91 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00529 Trre-Chr5 3362539 3363123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00529 43 180 bZIP Transcription Factor Family AT3G51960 53.793 1.65e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g00529 bZIP_2 5.7e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00529 K25785 - gmx:100527780 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00529 5 3362539 3363123 Trre5g00529 5 3362539 3363123 ECH