Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00495 ATGGAAAGGACATCTTCATCATCTTCGTCATCATCATCATCCTTCAATTTGAATTCTCATCAATGGATGTACGATGTGTTCATAAATTTCAGAGGGGAAGACACACGTAAGAACTTGGTTTCTCATCTATATGCTGCTCTATCAAATGCGGGAATCAACACTTTTCTTGATGATGAAAAACTTAAAAAGGGATGGGAAGTAGAACCAGAACTATTGCGAGCAATTAAAGGTTCTCAAATATGCTTAGTTATTTTCTCAGAACACTACACTCAATCTAGTTGGTGTCTTGTTGAACTGGTGAAAATCATGGAACACCGCAGAAGTAATAATAATGGTCCCGTGGTTATACCCATATTTTACCATGTTGACCCATCTGTCGTTCGTCGTCAGGTGGGTGATTTTGGAAAAGCTTTGGAAGCTATTACCAAAAGAATTCAACCGGAAAAAGACAGGCAAGAACTTTTGCGGACGTGGAAGCGTGCTCTCAATCAAGCTGCAAATATTTCTGGATGGGATTCCAGCACTTTCAGGAGTGAGAATGAACTAGTGAACAAAATTGTTGATGAAGTTTTGAGAAAGCTGGAAAACACATTCTTACCTACCACGGAATTCCCGGTTGGACTAGAGTCCCGTGTGGACCAAGTGTTTATGTCGATTGAAAATCAATCGAGCAAAGTTTCTATGGTAGGGATCTGGGGAATGGGTGGGTTGGGTAAAACTACCACAGCCAAAGGCATCTACAATAAAATTCATCGCAAATTCGTGCATAGAAGTTTCATTGAGAATATTAGACAAACTTGCGAATCAGATAAAGGGTATATTCGGTTACAGCAACAACTTCTTTCAGATCTCTTCAAAACAAAGGAGAAGATACACAACATTGCATCGGGGACAGCTATAATCAACAAAAGAATCTCTGCAAAAAAGGTGCTCATTGTACTTGATGATGTGACGAAAGTACAGCAAGTTAAAGCTCTATGTGGAAATCGTAAATGTTTAGGTTTGGGAAGTGTACTGATTGTTACAACCAGGGATGCACATATACTTAAGTTACTTGAAGTTGACTGTGTCTGTACAGCAGAAGAAATGAATGATACCGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGAAACGCGATTCCAAGAGCAAACTTCAGTGAACTCTCAAAAAGTGTTGTTAATTACTGTGGAGGATTACCCTTGGCTGTTGAAGTCCTTGGATCTCACTTATATGAAAGGTCAAAAGAAGAATGGAGAAGTGTGCTATCAAAGTTAGAAAAAATTCCCAATGATGAAGTGCAAGAGAAACTGAGAATAAGTTATGATGGTTTGATGGATGAAATGAAAAAGGCTATATTTCTTGATGTATGTTGTTTCTTTATTGGAAAGGAAAAAGACTATGTTACCGAGATACTAAATGGCTGTGGACTTTTTGCTGGTATTGGAATAGCTGTCCTCATAGAGCGGAGCCTTCTAAAGGTTGAAAAGAATAACAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGTGAAAGTGCAACGAAAGATCCTGGAGAGCGTAGTCGGTTGTGGATGCAGGAGGATGTATGTGATGTTTTAACAAAGAATACGGGAACACAAAAAGTTGAGGGATTGATTTTGAACTTGCAAAGCAAAGGCAGAGATAGCTTCAATACCAATGTTTTTCAGCAGATGAAGAACATGAGACTTTTGCAACTTGATTGTGTTGACCTCACTGGAGATTTTGGACATCTTTCCAAAGAATTGAGATGGCTCAATTGGCAACGATCTACCTTCAACTGTATACCCAATGACTTTTATCTGGGGAATCTAGTTGTTCTTGAATTAAAATATAGTCATGTTAAACAAGTTTGGAAGGAAACCAAGTTGTTGGACAAGCTAAAGATACTGAATCTCAGTCATTCCAAGTACTTGAGAAGCACCCCTGACTTTTCAAAATTACCGAATCTAGAAAAGCTCATAATGAAGGATTGTCCAAGTTTGTCCAAGGTACACCCATCCATTGGAGTTCTCAGGAATCTTCTTCTGCTAAATGTGAAGGACTGTACAAGTCTTGGCAATCTACCAAGGGAAATCTATCAGTTGATATCTGTGAAAACACTCATCCTTGATGGTTGTTCGAAGATTGACAAATTGGAAGAAGATATAGTGCAAATGACATCCTTGACAACTTTAGTTGCAGCAAATACCGGTGTCAAACAAGCACCCTTTTCCATAGTTAGATCAAAAAGCATTATGTATATATCCCTATGTGGATATGAAGGATTATCACGTGATATTTTTCCTTCTCTCATTTGGTCTTGGATGACACCAACAATGAATTCATTACCACACATTCCCCGCACTACCATGGATGTAGAGAGTAATAATTTGGTTCTGGGTTATCAATCAACAATGCATAGTAGCTGTTCTGAACATAGAAGTGTTTGGGTACAATGCCAATCTGAGATTCAACTAATTCAAAAATTAAGTAGTTTTCTTGATGGTCTATATGGTGCAGATCTTACCGAATCGGAAACATCACATGCATCACAAATCTCGGATCTATCCTTGAAATCTCTTTTGGTTACAATGGGAAGTTGCCACATAGTCGCTGATACTCTTGGCAAGAGCTTATCACAGGGATTGACAACCAATGATTCTAGTGATTCTTCCCTTCCGGGTGATAATTATCCTTCATGGTTAGCCTATACAAGTGAAGGACCTTCCGTGCGTTTTCAAGTACCCAAGGATAGTGATAACTGCTTGAAGGGAATAACTTTTTATGTTGTTTATTCATCCACACCCAAAAACATGGAAACTGAATGTCTCACTAGTATTTTGATCATTAATTACACCAAATTCACTTTCCATATATACAAGCGAGACACAGTAATGTCCTCTAACGATGAAGATTGGCAGAGTGTAGTATCAAATTTAGCAGTTGGGGACAATGTAGGGATTTTTGTAGCTTTTGGACATGGATTGACCGTTAAGAAGATGGTTGTCTACCTAATATATGGCCAGTCAAATGCTATGCAAATTGAGCCATCAATTACTGTGGAAGTTGAACCATCCAGTGAAGTACAAATGGAGCCATTACCTGAACTGGAATTGCAACCATCATCTAACGTGAAAAGGGAGCCATCACCTGAAGATGAAGCGCAGCCATCACTTGATGTGAAGGTGGAGCCATCACTTGTTGTCAAGAATGAGACATTACCTGAACTGGAAGTGCAACCATCGTCTAATGTGAAAAGGGAGCCATCACCTGATGTGAAGATGGAGCCGTCATCTGTCGTCATGAATGAGCCATTACCGAGGAGAAATAAAAATATATTTGCAAGACTTTCAAAGAGAGTGGGAGAGTGTTTACGCTTGAACTAG 3405 0.39 MERTSSSSSSSSSSFNLNSHQWMYDVFINFRGEDTRKNLVSHLYAALSNAGINTFLDDEKLKKGWEVEPELLRAIKGSQICLVIFSEHYTQSSWCLVELVKIMEHRRSNNNGPVVIPIFYHVDPSVVRRQVGDFGKALEAITKRIQPEKDRQELLRTWKRALNQAANISGWDSSTFRSENELVNKIVDEVLRKLENTFLPTTEFPVGLESRVDQVFMSIENQSSKVSMVGIWGMGGLGKTTTAKGIYNKIHRKFVHRSFIENIRQTCESDKGYIRLQQQLLSDLFKTKEKIHNIASGTAIINKRISAKKVLIVLDDVTKVQQVKALCGNRKCLGLGSVLIVTTRDAHILKLLEVDCVCTAEEMNDTESLELFSWHAFRNAIPRANFSELSKSVVNYCGGLPLAVEVLGSHLYERSKEEWRSVLSKLEKIPNDEVQEKLRISYDGLMDEMKKAIFLDVCCFFIGKEKDYVTEILNGCGLFAGIGIAVLIERSLLKVEKNNKLGMHDLIRDMGREIVRESATKDPGERSRLWMQEDVCDVLTKNTGTQKVEGLILNLQSKGRDSFNTNVFQQMKNMRLLQLDCVDLTGDFGHLSKELRWLNWQRSTFNCIPNDFYLGNLVVLELKYSHVKQVWKETKLLDKLKILNLSHSKYLRSTPDFSKLPNLEKLIMKDCPSLSKVHPSIGVLRNLLLLNVKDCTSLGNLPREIYQLISVKTLILDGCSKIDKLEEDIVQMTSLTTLVAANTGVKQAPFSIVRSKSIMYISLCGYEGLSRDIFPSLIWSWMTPTMNSLPHIPRTTMDVESNNLVLGYQSTMHSSCSEHRSVWVQCQSEIQLIQKLSSFLDGLYGADLTESETSHASQISDLSLKSLLVTMGSCHIVADTLGKSLSQGLTTNDSSDSSLPGDNYPSWLAYTSEGPSVRFQVPKDSDNCLKGITFYVVYSSTPKNMETECLTSILIINYTKFTFHIYKRDTVMSSNDEDWQSVVSNLAVGDNVGIFVAFGHGLTVKKMVVYLIYGQSNAMQIEPSITVEVEPSSEVQMEPLPELELQPSSNVKREPSPEDEAQPSLDVKVEPSLVVKNETLPELEVQPSSNVKREPSPDVKMEPSSVVMNEPLPRRNKNIFARLSKRVGECLRLN 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00495 1134 Gene3D - 362 446 IPR042197 -
Trre5g00495 1134 Gene3D Ribonuclease Inhibitor 513 743 IPR032675 -
Trre5g00495 1134 Pfam TIR domain 24 198 IPR000157 GO:0007165
Trre5g00495 1134 SUPERFAMILY L domain-like 503 779 - -
Trre5g00495 1134 PRINTS Disease resistance protein signature 397 411 - -
Trre5g00495 1134 PRINTS Disease resistance protein signature 635 651 - -
Trre5g00495 1134 PRINTS Disease resistance protein signature 304 318 - -
Trre5g00495 1134 PRINTS Disease resistance protein signature 228 243 - -
Trre5g00495 1134 MobiDBLite consensus disorder prediction 1032 1110 - -
Trre5g00495 1134 Pfam NB-ARC domain 210 447 IPR002182 GO:0043531
Trre5g00495 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 456 IPR027417 -
Trre5g00495 1134 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 171 IPR035897 -
Trre5g00495 1134 SMART till_3 23 168 IPR000157 GO:0007165
Trre5g00495 1134 Gene3D - 20 190 IPR035897 -
Trre5g00495 1134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 755 IPR044974 GO:0006952
Trre5g00495 1134 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 196 - -
Trre5g00495 1134 ProSiteProfiles TIR domain profile. 22 194 IPR000157 GO:0007165
Trre5g00495 1134 Gene3D - 191 357 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00495 Trre-Chr5 3080820 3085991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00495 24 752 WRKY Transcription Factor Family AT4G12020 29.200 1.36e-79 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00495 - - tpra:123923859 1350.11