Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00490 ATGGAATGTGAAAAGGTTGTTCATATTATTGATCTCCATTGTTCCGAGCCAGCTCAGTGGATAAATCTTATACAAACTTTAAAGACACGCCAAGGAGGTCCGCCGCATCTCAAAATTACAGGTATTCATGAAAAGAAGGAGATATTGGACCAAATGAGCTTTCATTTGACAGCTGAAGCTGGAAATTTGGATTTTCCTTTACAGTTCAATCCAATTGTTAGCAAACTCGAAGATGTTGATTTTGAAAACTTGCCTGTCAAGACAGGAGATGCTGTTGCAATTACTTCTGCTCTTCAGCTGCATTCTCTCCTTGCAACTGATGATGAAATGGTTGGGAAGATCTCACCAGCAGGACCATCCTCTATCAATCTGCAGAGAGCAGGTCAAATGGGTCAGAGGACTTTCGCAGAGTGGCTTGAAAGGGATATGATCAATGCGTATATCTTGAGTCCTGATTCAGCATTATCACCTCTTTTTTTAGGCGCTTCACCTAAGATGGGTATATTTCTTAATGCTATGCGGAAACTAAAACCGAAACTTTTAGTGATTACTGAACAAGAATCAAATCTAAATGGATGTAATTTAATGGAGAGAATAGACCGAGCATTATACTTTTACAGTTCACTTTTTGACTGCTTGGACTCAACTGTTACCAGAACATCAGTAGAGAGACAAAAACTCGAAAGCTTGCTTTTCGGAGAGCAAATAAAGAACATCATTACTTGTGAGGGAGTTGATAGAAAGGAGAGGCATGAGAAGGTTGAGAAATGGATTAGAAGGCTTGATATGGCTGGATTCGAGAAGGTACGTTTGAGTTACAATGGGAGGATAGAAGCAACAAGTCTATTGCAGCGTTATAGTCATAAATACAAGTTTAAAGAAGAAAATGATTGTTTGCTTATCTGTTGGAGTGATAGACCACTCTTTTCTGTATCGGCATGGAGTTTTAAGAGATGA 957 0.3908 MECEKVVHIIDLHCSEPAQWINLIQTLKTRQGGPPHLKITGIHEKKEILDQMSFHLTAEAGNLDFPLQFNPIVSKLEDVDFENLPVKTGDAVAITSALQLHSLLATDDEMVGKISPAGPSSINLQRAGQMGQRTFAEWLERDMINAYILSPDSALSPLFLGASPKMGIFLNAMRKLKPKLLVITEQESNLNGCNLMERIDRALYFYSSLFDCLDSTVTRTSVERQKLESLLFGEQIKNIITCEGVDRKERHEKVEKWIRRLDMAGFEKVRLSYNGRIEATSLLQRYSHKYKFKEENDCLLICWSDRPLFSVSAWSFKR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00490 318 Pfam GRAS domain family 2 314 IPR005202 -
Trre5g00490 318 ProSiteProfiles GRAS family profile. 1 315 IPR005202 -
Trre5g00490 318 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 311 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00490 Trre-Chr5 3056221 3057177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00490 1 318 GRAS Transcription Factor Family AT1G50420 50.926 3.94e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre5g00490 GRAS 8.7e-83 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00490 - - lja:Lj3g3v0821290.1 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00490 5 3056221 3057177 Trre5g00490 5 3056221 3057177 ECH