Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00487 ATGGCAGAGTTGGTTGCTGGGGCATTTCTTTCTTCTTCCTTTCAAGTGATTTTTGAGAAGTTGGCTTCAGTTGATATCAGAGACTACTTTGGTGGTAATAAACTTGATGATCTGGTCAAAGAACTTGATATTAAACTCAACTCTATCAACCATGTCTTGGAAGAAGCAGAGATAAAGCAGTACCAAAACACACATGTGAAGAAGTGGCTTGATGAACTTAAACATGTTCTTTATGAAGCAGACCAAGTTTTGGATGAGATTGCTACTGATGCAATGTTGAAAAAGATGAAAGCTGAATCTGAACCTGTTACCACTAGTATGTTGAGCTTATTTTCAGCTTTAACTACTACAAATCCATTTGAATATAGGATCAATGAACTACTGGAGAAACTAGAATTACTTGCAGATCAAAAGAAAGATTTGGGATTGGAAGATGGTCCTTCTGCTAGTAAAGAAGGCTTAGTCAGTTGGAAACCAGCAAAAACATTGTCAACTACATCTCTCGTGGATGAATCAACCATATATGTTAGAGATGTTCGTAAGCAAGAACTTATCAATATTTTACTTGAAGGCAATGACAGTGGCAACCAAGTTCCTTCAATAATCAGCATAGTTGGTTTAGGAGGGATGGGGAAAACCACCCTTGCTAAGCTTGTGTACAATGACAACAAGATAAAGGAGCATTTTCTACTTGAAGCATGGGTCTATGTTTCAGAATCTTTTAATGATGTTGGACTCACCAAAGCAATTCTCAAGTCATTTGGTTTTTCAGCAGATGGTGAAGACTTGAGTCTACTTCAAAATCAACTGCAGCACGAACTAACGGGAAAGAAATACTTGCTTGTTTTAGACGATATCTGGAACTGGAACGGGAATGCTGCTTGTTGGGAGAACTTACTACTTCCGTTTAATCACGGATCTTCTGGAAGTAAGATTATTGTGACAACACGTGAAAAGAAGGTAGAGAATGTCCTGAATTCGAAGTTATTTGATTTACAACAATTGGACAAAAGCGATTGTTGGAGATTATTTGAGACACATGCATTTCATGGCAGGAATGTGTGCGAACATCCAGATCTTGAATCAATTGGAAAGAAAATGGTGAAGAAGTGTGGAGGGTTGCCTTTAGCTATAAAAACATTGGGCCAACTCTTGCGAAGAAAATTCTCTGAACCTGAATGGATGAAGATATTAGAGACTGATATGCGGCGATTATCAGATGAAGACAACAAAGTTAACCCAGTGTTGAGATTGAGTTACCACAATCTCCCTTCCAATCATAAGCGTTGTTTTGCTTATTGTTCTATATTTCCCAAAGGTTCTGAGTTTGGCAAAGGTGACTTAATCATTTTTTGGATGGCAGAAGGTTTGTTGAAGTGTTGCGAAGCATACGAAAGTGAAGAAGAGTTCGGTAGTCGAATTTTCAACGATCTTGAGTCAATTTCATTTTTCCAAAAATCACTTTCCCACAAATTTGTGATGCATGATCTTGTCAATGATTTAGCAAAATCAGTGGCAGGAGAATTTTGTAGGAAAATAGATGATGCTTGGGTGGAAGGTAACCTTGAAAGGACACGTCACGTTTTGTGCTCGCTTGAATTAAATTGTGGTGATAAATTACTAAAGCCAATATGTGAAGTTAAGGGACTACGTAGTCTAATACTAACAGGAGACGATACTATGTTGATAAGCAGCGATGTGCAATGTGATCTGTTTTCAAGACTAACATATTTGCGGATGTTAGTAATTGGTGTTTGTGGTCTCTCAGAGCTAGTGGATGAGATAGGCAATTTAAAACTTTTGCGTTATCTAGAGCTTGCTGAGAATAAGATTACAAGCCTACCTGATACCATATGTGCTTTGTACAATTTGCAAACACTCTCGTTGGAACAGTGTGATGAATTGACAGAGCTCCCTTCAAATTTTTCCAAGCTCATCAATTTACGTCATCTTGAACTCCCTGATTTAAAGAAGATGCCAAAGAATATAGGAAAGCTAACCAATCTTCAAACATTGAATTATTTTATTGTGGAAGAGCAGAACGGATCTGGTATTAAAGAATTGGCAAATATGAACAATCTTCATGGAACAATTAAAATTACAGGCTTGGGTAATGTCATTGATCATGCAGATGCTGCAAAAGCCAATTTGAAAGATAAAAAGAATCTAGAAGGATTATATATGGTGTTTGATAGTGGAAGAGAAGAAATGAATGACTCAATAGTTGAAAGCATTGTGTCTGTGTTGGAGGCTCTTCAACCAAATAGAAACTTGAAGAAACTCACCATTGAAAACTACAATGGCAACCGCTTTCCAAATTGGCTAAGGGGTTATCATTTACCCAACTTAGTAAAATTGAAGATAAGTAAATGCAACAAGTTGGAGGAATGGCTATGTCTTGAAGGGTTTCCTTTGCTTAAAAAGCTTTGCATAAGAGAATGTCGCAAATTGAAAAGGGTTCCGTCTCAACACCTTCCTTCTTTACAAGAATTAGAGATACATGATTGCGACAAGTTGGAGGAATGTTTATGTCTTGAAGGATCTCCTTTACTTGTAAATGTTTCTATAGAATATTGTTCCAAATTGAAAAGGGCCCCCCTACCTCAACACCTTCCTTCTTTACAAAAATTGGAGATTACTGATTGCAAAATGTTGGAGGCATCAATTCCCAAGGGTGATAATATCGAAGAGTTAGAACTCCGGGGATGTGATCTGATTTCGGTAAATGAAATGCCGACCAACTTGAAAAGGTTTGTCCTTTGGGAAAATCGGTACACTGAGTTCTCGGAGGAGCAAAATTTAGTAAATTGTACCGTTCTTGAAGTGTTGCAGTTTGATTTAAGAGGCTTTGTTGAAAAACGTCCCTCTTTAGATCTGCGTTGCTATAATTCTCTTCGTGAACTTGAAATAAATGGCTGGTGCTCCCCCTCTTTTCCCTTTTCACTACATCTTTTCAACAATCTTGATGCTCTCAGTTTGTACGATTGCCCACAGCTGGAATCATTTCCAAGGGGAGGTTTGCCTTCCAACTTGAGAGAACTTGTAATATCCAATTGCCCTAAACTGATTTCTTCAAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTTTGAATAAATTAACAGTTGGTGATGATGAGTTTGAAAACGTGGAGTCATTCCCAGAGGAGAATCTGCTGCCACCAACTCTGAAGTGGCTTTGGTTGACTAATTGTTCAAAGCTAAGAATAATGAACAACAAGGGTTTTCTCCACCTCAATTCTCTCCGAGAACTATGGATTTGGGACTGCCCTAGTCTTGAGAGCTTGCCAGAGGAGGGTCTACAACAACTCAGCTCCCTTTCTCATTTGTATATTAAAGAATGTCCGATAATTAGGGAGAAGTACAAAAAGGAGGGAGGAGAGTGTTGGCATACAATCAGTCACATCCCTATTGTCTGGGGTCTTTGA 3447 0.3832 MAELVAGAFLSSSFQVIFEKLASVDIRDYFGGNKLDDLVKELDIKLNSINHVLEEAEIKQYQNTHVKKWLDELKHVLYEADQVLDEIATDAMLKKMKAESEPVTTSMLSLFSALTTTNPFEYRINELLEKLELLADQKKDLGLEDGPSASKEGLVSWKPAKTLSTTSLVDESTIYVRDVRKQELINILLEGNDSGNQVPSIISIVGLGGMGKTTLAKLVYNDNKIKEHFLLEAWVYVSESFNDVGLTKAILKSFGFSADGEDLSLLQNQLQHELTGKKYLLVLDDIWNWNGNAACWENLLLPFNHGSSGSKIIVTTREKKVENVLNSKLFDLQQLDKSDCWRLFETHAFHGRNVCEHPDLESIGKKMVKKCGGLPLAIKTLGQLLRRKFSEPEWMKILETDMRRLSDEDNKVNPVLRLSYHNLPSNHKRCFAYCSIFPKGSEFGKGDLIIFWMAEGLLKCCEAYESEEEFGSRIFNDLESISFFQKSLSHKFVMHDLVNDLAKSVAGEFCRKIDDAWVEGNLERTRHVLCSLELNCGDKLLKPICEVKGLRSLILTGDDTMLISSDVQCDLFSRLTYLRMLVIGVCGLSELVDEIGNLKLLRYLELAENKITSLPDTICALYNLQTLSLEQCDELTELPSNFSKLINLRHLELPDLKKMPKNIGKLTNLQTLNYFIVEEQNGSGIKELANMNNLHGTIKITGLGNVIDHADAAKANLKDKKNLEGLYMVFDSGREEMNDSIVESIVSVLEALQPNRNLKKLTIENYNGNRFPNWLRGYHLPNLVKLKISKCNKLEEWLCLEGFPLLKKLCIRECRKLKRVPSQHLPSLQELEIHDCDKLEECLCLEGSPLLVNVSIEYCSKLKRAPLPQHLPSLQKLEITDCKMLEASIPKGDNIEELELRGCDLISVNEMPTNLKRFVLWENRYTEFSEEQNLVNCTVLEVLQFDLRGFVEKRPSLDLRCYNSLRELEINGWCSPSFPFSLHLFNNLDALSLYDCPQLESFPRGGLPSNLRELVISNCPKLISSREEWGLFQLNSLNKLTVGDDEFENVESFPEENLLPPTLKWLWLTNCSKLRIMNNKGFLHLNSLRELWIWDCPSLESLPEEGLQQLSSLSHLYIKECPIIREKYKKEGGECWHTISHIPIVWGL 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00487 1148 Pfam NB-ARC domain 181 421 IPR002182 GO:0043531
Trre5g00487 1148 Gene3D - 420 505 IPR036388 -
Trre5g00487 1148 Gene3D Ribonuclease Inhibitor 534 909 IPR032675 -
Trre5g00487 1148 Gene3D - 14 119 - -
Trre5g00487 1148 ProSiteProfiles Leucine-rich repeat profile. 600 621 IPR001611 GO:0005515
Trre5g00487 1148 Coils Coil 124 144 - -
Trre5g00487 1148 Gene3D - 334 419 IPR042197 -
Trre5g00487 1148 PRINTS Disease resistance protein signature 371 385 - -
Trre5g00487 1148 PRINTS Disease resistance protein signature 869 885 - -
Trre5g00487 1148 PRINTS Disease resistance protein signature 273 287 - -
Trre5g00487 1148 PRINTS Disease resistance protein signature 201 216 - -
Trre5g00487 1148 Gene3D - 157 329 IPR027417 -
Trre5g00487 1148 SUPERFAMILY RNI-like 824 1123 - -
Trre5g00487 1148 Coils Coil 39 59 - -
Trre5g00487 1148 PANTHER DISEASE RESISTANCE PROTEIN RP 42 887 IPR044974 GO:0006952
Trre5g00487 1148 SUPERFAMILY L domain-like 493 884 - -
Trre5g00487 1148 Gene3D Ribonuclease Inhibitor 910 1131 IPR032675 -
Trre5g00487 1148 Pfam Rx N-terminal domain 10 97 IPR041118 -
Trre5g00487 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 434 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00487 Trre-Chr5 3039586 3043032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00487 202 512 WRKY Transcription Factor Family AT5G45050 23.242 7.38e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00487 - - tpra:123913887 1433.7