Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00481 ATGTCAAAGAAGAAGTCTAGTTTAGGTAGACAAAAAATTCCTATTGAAAAAATTCCAAAAAAAAGTCATTTACAAGTTACTTTCTCTAAGCGCCGATCTGGACTATTCAAAAAGGCCAGTGAACTTTGCACCCTCTGTGGTGTTGAGATTGCAATTGTAGTTTTTTCTCCTGCCGATAAGGCATTTTCTTTTGGTCATCCAGAAGTTGAGTCTATCGTGGATCGCTATTTGACTCGCAATCCTCCGCAGGAATCTAGTGCTCACCAACTTGTCGAGGCTCATAGAAACGCAAATGTCCGCGATCTCAACATCCAATTGACACAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGGGAAGAGATAGAACACATGAGAAAAGCTAGGGAAAGTCAATTTTGGTGGGAGAGCCCTATTGATGAGCTTGGCTTAAATGAATTGGTCCAATTAAAGGGTTCTATTGAGGAGCTGAAGAATAACATAGGAAAATTTGCTAGCAAATGCATGATGGAACAATCTAATGTGCCTTCACCAAATATGGGAGCCAATGGATTTGGACGTTATGATTCCCTTGACAACAAATTTGGTCTTGGCATTAATATTGCTCCCCCACCTCCTAATTCTTATTATCTTGGTTTTCGAAATGGGTATCTTTGA 660 0.3939 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLTRNPPQESSAHQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEEIEHMRKARESQFWWESPIDELGLNELVQLKGSIEELKNNIGKFASKCMMEQSNVPSPNMGANGFGRYDSLDNKFGLGINIAPPPPNSYYLGFRNGYL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00481 219 Coils Coil 99 119 - -
Trre5g00481 219 PANTHER MADS BOX PROTEIN 10 163 - -
Trre5g00481 219 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Trre5g00481 219 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Trre5g00481 219 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Trre5g00481 219 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Trre5g00481 219 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Trre5g00481 219 Gene3D - 89 180 - -
Trre5g00481 219 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Trre5g00481 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Trre5g00481 219 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Trre5g00481 219 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Trre5g00481 219 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00481 Trre-Chr5 3007258 3007917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00481 5 183 Type I MADS-box Gene Family AT5G60440 52.747 9.96e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g00481 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00481 - - gmx:100793705 341.273