Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00476 ATGGGATCTATCTATGAAGATGTTCATGATCTTCCAAATTTTTCACCTGTTGAAGTAGAGGATGATGATGATGCATGTCTCTCTGCTATGCTTCTCTGTTGTGGTCCAATGATTTTTACTTCAGTATTGAAAGCTGCAATTGAACTCAACTTGTTTGAGATCATATCTAAGGCAAATCCACCATGTGTATCAGCATCATATGTTGCTTCAAAACTATCAACAACACAACATCCTCAATTGCCTCGAAGACTTGATCGAATGTTGTGTTTACTTGCAAGTCACTCTCTTCTTGTTTGTTCTACAAGAACAAATGAAGAGGGTGGGAGTGAAAGATTTTATGAACTTTCATTGGCTGGTAAATATTTTGTTAAAGATGAGAAGAATGGATCTGTTGCTTTATTCTCATCATTTATGAATCACCAAAAGTTCATGGATGCATTCAACAATTTTAAGGAGGTACTATCAAACTGTGAAAATGGACTATACATGAATGTTCATGGAAAGCCAGTTTATCAAGGTATACAGTCTGATCCAGCTTGGAATCATGTGTTTAACAAATCAATGGCTGATATTTGCACAATAGAAATGAAGAAAATATTAGAAAAATACAAAGGATTTGAAGGAATATCCATGTTGGTTGATGTTGGAGGAGGAATTGGGCAAAGTTTGAATATGATAATCTCTAAGTATCCTTCTATAAAGGGCATTAATTTTGATTTGCCCCAAGTCATACAACATGCTCCAATTTATCCAGGCATTGAGCATGTTGAAGGAGACATGTTTGAAAGTGTTCCAAAAGGTGATGCCATAATATTAAAGGCTATATTACACAATTGGTCTGATGAAAATTGTTTGAAAGTTCTAAGTAAGTGCTACAATGCTTTGCCACAACATGGTAAAGTAATTGTTGTGGATTTCATAATGCCTCAAGAAATTCAGCATACAAAAGCAGATAAGTTGATTACTAGCTTTGACAACCTCATGTTTCTGGATAGTGGTGTTGAAAGAACAGAGAAAGAATTTGAAAAGTTATGCAAATGCTCTGGATTTTCTAGTTTTTATGTTGTTTGTCTTGCCTTCTCAGCTCTAGGAGTGATGGAATTTCACAAATAA 1113 0.3486 MGSIYEDVHDLPNFSPVEVEDDDDACLSAMLLCCGPMIFTSVLKAAIELNLFEIISKANPPCVSASYVASKLSTTQHPQLPRRLDRMLCLLASHSLLVCSTRTNEEGGSERFYELSLAGKYFVKDEKNGSVALFSSFMNHQKFMDAFNNFKEVLSNCENGLYMNVHGKPVYQGIQSDPAWNHVFNKSMADICTIEMKKILEKYKGFEGISMLVDVGGGIGQSLNMIISKYPSIKGINFDLPQVIQHAPIYPGIEHVEGDMFESVPKGDAIILKAILHNWSDENCLKVLSKCYNALPQHGKVIVVDFIMPQEIQHTKADKLITSFDNLMFLDSGVERTEKEFEKLCKCSGFSSFYVVCLAFSALGVMEFHK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00476 370 PANTHER O-METHYLTRANSFERASE 39 353 IPR016461 GO:0008168
Trre5g00476 370 Pfam O-methyltransferase domain 151 351 IPR001077 GO:0008171
Trre5g00476 370 Gene3D - 38 199 IPR036388 -
Trre5g00476 370 Pfam Dimerisation domain 42 92 IPR012967 GO:0046983
Trre5g00476 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 370 IPR016461 GO:0008168
Trre5g00476 370 PIRSF O-mtase 11 370 IPR016461 GO:0008168
Trre5g00476 370 SUPERFAMILY "Winged helix" DNA-binding domain 21 126 IPR036390 -
Trre5g00476 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 366 IPR029063 -
Trre5g00476 370 Gene3D Vaccinia Virus protein VP39 181 358 IPR029063 -
Trre5g00476 370 FunFam Caffeic acid 3-O-methyltransferase 11 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00476 Trre-Chr5 2990577 2992817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00476 1 360 Monolignol Biosynthesis Gene Families AT5G54160 47.253 2.08e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00476 - - mtr:11418328 674.085