Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00449 ATGGGATCTATCTATGAAGATGTTCATGATCTTCCAAATTTTTCACCTTTTGAAGTAGAGGATGATGATGATGATGCATGTCTCTCTGCTATGCTTCTTTGTTGTGGTCCAATGATTTTTACTTCAGTGTTGAAAGCTTCCATTGAACTCAACTTGTTTGAGATCATATCTAAGGCAAATCCACCATGTGTTTCAGCATCATATGTTGCTTCAAAACTATCAACAACACAACATCCTCAATTGCCTCGAAGACTTGATCGAATGTTGTGTTTACTTGCAAGTCACTCTCTTCTTGTTTGTTCTACAAGAACAAATGAAGAAGGTGGGAGTGAAAGATTTTATGAACTTTCATTGGCTGGCAAATACTTTGTTAAAGATGAGAAGAATGGTTCTGTTGCTTTGTTCTCATCATTTATGAATCACCAAAAGTTCATGGATGCATTCAATAATTTTAATGAGGTACTATCAAACTGTGAAAATGGACTATACATGAATGTTCATGGAAAGCCAGTTTATCAAGGTATACAGTCTGATCCAGCTTGGAATCATGTGTTTAACAAATCAATGGCTGATATTTGCACAATAGAAATGAAGAAAATATTAGAAAAATACAAAGGATTTGAAGGAATATCCATGTTGGTTGATGTTGGAGGAGGAATTGGGCAAAGTTTGAATATGATAATCTCTAAGTATCCTTCTATAAAGGGCATTAATTTTGATTTGCCCCAAGTCATACAACATGCTCCAATTTATCCAGGCATTGAGCATGTTGAAGGAGACATGTTTGAAAGTGTTCCAAAAGGTGATGCCATAATATTAAAGGCTATATTACACAATTGGTCTGATGAAAATTGTTTGAAAGTTCTAAGTAAGTGCTACAATGCTTTGCCACAACATGGTAAAGTAATTGTTGTGGATTTCATAATGCCTCAAGAAATTCAGCATACAAAAGCAGATAAGTTGATTACTAGCTTTGACAACCTCATGTTTCTGGATAGTGGTGTTGAAAGAACAGAGAAAGAGTTTGAAAAGTTATGCAAATGCTCTGGATTTTCTAGTTTTCATGTTGTTTGTCTTGCCTTCTCAGCTCTAGGAGTGATGGAATTTCACAAATAA 1116 0.3495 MGSIYEDVHDLPNFSPFEVEDDDDDACLSAMLLCCGPMIFTSVLKASIELNLFEIISKANPPCVSASYVASKLSTTQHPQLPRRLDRMLCLLASHSLLVCSTRTNEEGGSERFYELSLAGKYFVKDEKNGSVALFSSFMNHQKFMDAFNNFNEVLSNCENGLYMNVHGKPVYQGIQSDPAWNHVFNKSMADICTIEMKKILEKYKGFEGISMLVDVGGGIGQSLNMIISKYPSIKGINFDLPQVIQHAPIYPGIEHVEGDMFESVPKGDAIILKAILHNWSDENCLKVLSKCYNALPQHGKVIVVDFIMPQEIQHTKADKLITSFDNLMFLDSGVERTEKEFEKLCKCSGFSSFHVVCLAFSALGVMEFHK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00449 371 Pfam O-methyltransferase domain 155 352 IPR001077 GO:0008171
Trre5g00449 371 PANTHER O-METHYLTRANSFERASE 40 354 IPR016461 GO:0008168
Trre5g00449 371 Gene3D Vaccinia Virus protein VP39 182 359 IPR029063 -
Trre5g00449 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 371 IPR016461 GO:0008168
Trre5g00449 371 FunFam Caffeic acid 3-O-methyltransferase 13 123 - -
Trre5g00449 371 SUPERFAMILY "Winged helix" DNA-binding domain 22 127 IPR036390 -
Trre5g00449 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 367 IPR029063 -
Trre5g00449 371 Gene3D - 39 200 IPR036388 -
Trre5g00449 371 Pfam Dimerisation domain 43 93 IPR012967 GO:0046983
Trre5g00449 371 PIRSF O-mtase 13 371 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00449 Trre-Chr5 2795222 2797426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00449 1 361 Monolignol Biosynthesis Gene Families AT5G54160 46.301 1.94e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00449 - - mtr:11418328 669.848