Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00438 ATGGCAGAAGCAGTGATTGGTGGAGCTTTCCTCTCAGCTTTTCTTGATGTTATCTTCAAAAGGCTGACATCACCTGAAGTTGCCAACTTGATCCATGGAAACAAGCTTGACAAGAAATTACTTCAGAGGCTGGAGACAACTCTGAAAGTGGTTAGAACTGTGCTTAATGATGCTGAGAAGAAACAAATCAGGGATTCTGATGTCAACAACTGGCTCAATGATCTCAAAGATGCTGTCTATGTTGCTGATGATTTATTGGATGAAGTTTCAACCAAAACTGTGACTCAAAAAGAGGTAACCAATCCGTTTTTTCGCCTTTTCAACTTGCAAGATAGGGAGATGGTTAGTAGTTGTTTATCCATATCAATGAAGACTCTTCATATAGAGGATTTTAGAAAACTAGAATTCACAAAACAGCACAATCACAAGTTACTAGAGTCATTGCCAATACACAACAGCTGTGATTCACTCACATCGCTCCCATTGGACATCTTCCCGAATCTCAAACGTCTCTACATCAGCAACTGTGAAAATCTTGAATCTCTTTTGGTGTCACAGTCACATGATTTCATTCTTCAAAACTTGACTTCTTTTGAGATCCGCGAATGTCCGAATTTGGTATCATTGTCAAGTCAAGGATTGCCTGCTCCCAACATGACTCGCTTTCTCATTTCCAAGTGCAAGAAGTTAAAGTCACTGCCTCATCAGATGAATATTCTTCTCCCAAAGTTAGAATATTTCCGACTAGAAAACTGTCCGGAAATCGGATCCTTTCCAGAAAGTGGTATGCCGCCTAAGTTGAGATCAATTCGTATCACGAATTGCACGAAACTACTTAGTGGCCCGTCCTGGCCATCCATGGACATGCTTACTGATGTCACAATCGAAGGTCCATGTGATGCGATCAAGTCTTTCCCAAAGGAAGGTTTGTTACATGCCTCTCTTAAGTCTCTAACCCTACTCACATTTTCTAGTTTGGAGATGTTGGATTGTAAGGGCCTTCGCCATCTCACCTCCCTCCAACAGTTAAGAATAAACGATTGCCCGAAATTGGAGAACATGGTTGGAGTAGAAACACTGCCTGCCTCTATATTAAATCTTTGCATCATTGGATGTCCTTTGTTGAAAGAAAAGTGCCACATGAAACACCCTCAAATTTGGAACAAAATTTCACACATCAAGGACATCAGCGTTGATCATAAACGGATTTCATAA 1215 0.4074 MAEAVIGGAFLSAFLDVIFKRLTSPEVANLIHGNKLDKKLLQRLETTLKVVRTVLNDAEKKQIRDSDVNNWLNDLKDAVYVADDLLDEVSTKTVTQKEVTNPFFRLFNLQDREMVSSCLSISMKTLHIEDFRKLEFTKQHNHKLLESLPIHNSCDSLTSLPLDIFPNLKRLYISNCENLESLLVSQSHDFILQNLTSFEIRECPNLVSLSSQGLPAPNMTRFLISKCKKLKSLPHQMNILLPKLEYFRLENCPEIGSFPESGMPPKLRSIRITNCTKLLSGPSWPSMDMLTDVTIEGPCDAIKSFPKEGLLHASLKSLTLLTFSSLEMLDCKGLRHLTSLQQLRINDCPKLENMVGVETLPASILNLCIIGCPLLKEKCHMKHPQIWNKISHIKDISVDHKRIS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00438 404 PANTHER OS11G0677101 PROTEIN 192 352 - -
Trre5g00438 404 Gene3D - 21 124 - -
Trre5g00438 404 Pfam Rx N-terminal domain 10 98 IPR041118 -
Trre5g00438 404 SUPERFAMILY L domain-like 124 388 - -
Trre5g00438 404 Coils Coil 41 61 - -
Trre5g00438 404 Gene3D Ribonuclease Inhibitor 141 395 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00438 Trre-Chr5 2736529 2740278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00438 244 368 WRKY Transcription Factor Family AT5G45050 32.394 8.14e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00438 - - gmx:121172707 342.043