Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00436 ATGAAAATTTCTTCATCTTCATCTCATCAAAACCAAGATGGAAAAAGTGAAGTTTCTGACATGAAGAAGAAAATGAAGAAATCAAAGTCAATAAAAATTTCTGATCTTGAAACTCTTCAAATTCAATCAACATCACCTTCATCAGTTTCAAGAAGAACAACACAAGATGGTTCTCCAAATTACATGAAACCCACAAGTAGTTCACAATCAAAAAAGGAACTTTTTCATGTTAGTTTTAGAAAAACTCAATCTTGTTCTGTTTTTGAGAATCTTGATAGAAAATTTTCAAGTGATTCAAAAGCTATGTGTAAAAAACCTAGTTTGAGTTTGGTTAGAACATTAACAAAAACTACTAGTTTCAAAGGTTGTAGAAATTTTCCTAGAAAATCAACAAGAGCTACTTGTTCTTCAACTTTGAAAGATGCAAAATTTCCTTCATATCTTAAGCTTAATCATGGTGGAACTGAGTTAGAAGGAACTTCAGTTATGAGGGTTTGTTCATATAGTTATTGTTCTCTTAATGGTCATCATCATCATCATGGTGATTTGCCTCCTTTGAAGACGTTTATGTCTTCGAGGAGACGTGTTTTGAAGCGGGTGAAGCTTGAAGCGTTGAGTCCTCGAAGTCGAAGATTGAAGGTGGCTGGTGAGGTGGAAAAGAAGGACTGTGATGTTGAGCATAATGTGTTTGATGAAAAGCCTGAGTATGATGAAATTGGCATGGATTTCTTCATTGAAATTTATGCTGATGAAAAAAAGGATGCAAAATCGAAAGGTGAAGAAGGAATTGGAAAAACCGATATTCTCGAAGATGTTGTTGATCATGAAGATGTAATCAAGTCTACAGTTGAAGATGATGGCATAGAAGCAGATTTTCTTAAAAAGGCTGAGGATCAAGAGAAAAATGAAGTTGCAGATGAAGATCAACAAACTAGTTGGTCTCATGAAGAAATGAGTATGGAAGGTGTTGACAATAACATGGATGATTCTGATTCGGAAGCCAGTAATATGGAGTGTGATGAGGAACAATTTTATGGATTTGATCATGAACATGAGGCTGATTCTTCTGTTTACACAGATGAGGAAAATGATTCAAAATCCGAGTCCTCATCACAAAGTTCTCATGATGTGTCAGTGACATGGTTAGATGATATCCTTAGCAGCTATTATGATGACATTGTTCTTGTTGATGAAACACTCAAAGAAGCCAAATCAGAAGAAAACATCTATTTAGAAGAACAAGATCATGATGAAAAAAGTGGAAGCAATGAGACTCACGAAATCGGTTACCCCTGCAGTGATGTCGGTTGCGACCGTTCTTCTTTGGCAGATGAAGTATTTGATTACTTAACAAACGCCGAAGAAAATGTTGACGAGACCAGGGAAGAGAACAAAGATGATAACATCAATAAAAAGAAGAGCCAAATTCAACCGTCTCCGAGTGGATTTGAACTGTGTCCCTTGAGGCCAACAGACCAAACTCTTACAGCTGATCTGGCCCCTCATGAAGAGAAGAGTCAAATTCAATTATTTGATGTGGTTGAAGAAATCATAAAAGATATTCAAGATCAAGGCAAGGGTAATAAAAGAACAAGTTGCATAGTTGATGAAGATGAAGAGGAAAACACAAGAGAGAATTGGAAAGGTGTAATTAGGAGAAAGAGGTGTGTTGAAGAGGATGATGATGAAATGAGGAAGTTCAATCCAAGAGATCCAAATTTTTTGCCTTTGGTTCCTGAGAAAGAAAAGGAAAAAGTTGATTTGAGGCATCAAATGATGGATGAGAGAAAGAATGCAGAGGATTGGATGGTTGATTGTGCACTAAGACAAGCTGTTAACAAGCTTGCTCCTGCTAGGAAGAAGAAGCTGATGGATCCTCCTAAGGTAAAGGTCAACCCATGA 1902 0.3654 MKISSSSSHQNQDGKSEVSDMKKKMKKSKSIKISDLETLQIQSTSPSSVSRRTTQDGSPNYMKPTSSSQSKKELFHVSFRKTQSCSVFENLDRKFSSDSKAMCKKPSLSLVRTLTKTTSFKGCRNFPRKSTRATCSSTLKDAKFPSYLKLNHGGTELEGTSVMRVCSYSYCSLNGHHHHHGDLPPLKTFMSSRRRVLKRVKLEALSPRSRRLKVAGEVEKKDCDVEHNVFDEKPEYDEIGMDFFIEIYADEKKDAKSKGEEGIGKTDILEDVVDHEDVIKSTVEDDGIEADFLKKAEDQEKNEVADEDQQTSWSHEEMSMEGVDNNMDDSDSEASNMECDEEQFYGFDHEHEADSSVYTDEENDSKSESSSQSSHDVSVTWLDDILSSYYDDIVLVDETLKEAKSEENIYLEEQDHDEKSGSNETHEIGYPCSDVGCDRSSLADEVFDYLTNAEENVDETREENKDDNINKKKSQIQPSPSGFELCPLRPTDQTLTADLAPHEEKSQIQLFDVVEEIIKDIQDQGKGNKRTSCIVDEDEEENTRENWKGVIRRKRCVEEDDDEMRKFNPRDPNFLPLVPEKEKEKVDLRHQMMDERKNAEDWMVDCALRQAVNKLAPARKKKLMDPPKVKVNP 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00436 633 MobiDBLite consensus disorder prediction 1 69 - -
Trre5g00436 633 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 3 622 IPR044681 GO:0005516
Trre5g00436 633 MobiDBLite consensus disorder prediction 454 472 - -
Trre5g00436 633 MobiDBLite consensus disorder prediction 453 487 - -
Trre5g00436 633 MobiDBLite consensus disorder prediction 342 369 - -
Trre5g00436 633 MobiDBLite consensus disorder prediction 295 377 - -
Trre5g00436 633 MobiDBLite consensus disorder prediction 323 338 - -
Trre5g00436 633 MobiDBLite consensus disorder prediction 407 427 - -
Trre5g00436 633 Pfam Plant calmodulin-binding domain 529 622 IPR012417 GO:0005516
Trre5g00436 633 SMART CaM_binding_2 523 625 IPR012417 GO:0005516
Trre5g00436 633 MobiDBLite consensus disorder prediction 34 69 - -
Trre5g00436 633 Coils Coil 443 470 - -
Trre5g00436 633 MobiDBLite consensus disorder prediction 407 424 - -
Trre5g00436 633 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00436 Trre-Chr5 2732475 2735002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00436 539 623 Calmodulin-binding Proteins AT2G38800 54.118 2.33e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00436 - - tpra:123913208 1071.23