LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g00432	ATGGAACAACCAGCACTACCTTCTTTGTCTTCTTTCACATGTGATTGGACTTATGATGTTTTTCTTAGCTTTAGAGGCACTGATACTAGAAACAATTTCACTGGTAATCTCTACAACTATCTTCAGCATCAAAGAGGTATACAAACTTTCATTGATGATGAAGAAATTCAAAAAGGAGAACAAATCACACCTACTCTTCTTCAAGCAATTAAAGAATCTAGAATTTTCATTGTTATTTTATCCCCTAACTATGCATCTTCAACTTTCTGTTTGACTGAACTTGTTACCATCCTTGAATGTTCAAAGTTACAAGGAAGGTTGTTTTTGCCGATTTTTTATGATGTGGATCCATCTCATATTAGAAACATAACTGGTACTTATGCTGAAGCTTTTGCAAAACATGAGGTGAGGTTTGGAGATGAGAAGGATAAGGTGCAGAAATGGAGGGATGCTTTACATCATGCTGCAAGTGTGTCTGGTTGGCATTTCAAACCAGGGTTTGAATCAGAGTATAAGTTTATTGGAAAGATAGTTGAAAAGGTTTCTATGAAAATCAACCGCGTTCCTTTGCATGTTGCAAACAATCCAGTTGGGTTGGAGTCTCGAGTGTTAGAAGTGACATCTCTCCTTGGACTTGAGTCCGGTGAGAGAGTCAACATGGTAGGCGTTTATGGAATCGGCGGAATAGGCAAATCAACAATTGCTCGTGCTGTGCATAACTTCATAGCCGATCAATTCGAAGGTGTGTGTTTTCTTGCTGACATAAGAGAGAGGGAAATTCATCATGGTCTTGTACAACTCCAAGAAACATTACTTTCTGAAATACTTGGAGAGAGGGATATTAAAGTGGGAGATGTTTACAAAGGAATTTCAATAATTAAAAGGAGGCTTAAAACAAAGAAAGTCCTTTTGATTCTTGATAATGTTGACAAAGAAAAACAGTTACAGGCACTTGTAGGAGGACATGATTGGTTTGGCTCTGGCAGCAAGATCATAATCACTACAAGAGACAAGCATTTGCTGGCTACTCATGGAATTGTGAAATTATATGAGGTTAAACAACTAGAAAATGAAAAGGCTCTTGATTTATTTAGTTGGCATGCATTTAAAAATAAAAAAATTGATCCAGGTTATGTGAATATTGCAAAACGTGCAGTATCATATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTCGGAAAAAGTTTAGCTGTATGGAAATCCTCTTTAGATAAATATGCAGGAGTCCTTCGTAAAGACATCCATGAAATTATGAAAGTTAGCTATGATGATTTGGAAGAAGATGTGAAGGGTATTTTTTTAGATATTGCGTGTTTCTTCAATTCTTACGATATAGGCTATGTCAAAGAAGTACTATACTCCCATGGTTTTCACGCGGAAGGTGGCATACAAGAACTAACTGACAAATGTCTCGTAAAAATTGATGTCAATGGTCGTGTGAGAATGCATGACTTGATTCGTGACATGGGCAGAGAAATTGTGAGGCAGGAATCAATATTGGAGCCTGGAAGACGCAGTAGATTATGGTTTAGTGATGACATTGTTCATGTTTTGGAAGAAAACAAGGGAACTGATACAATTGAAGTCATAATCATCGACTTGCATAAAGACAGAAAAGTGAACTGGTGTGGAGATGCTTTTGGGCAGATGAAGAACTTGAGAATTCTTATAATTAGAAATGCACAATTTTCCATAGGTCCTCAAATTCTTCCAGATAGCTTGAGAGTGCTTGATTGGTGTGCATATCAATCGCCCTCTTTACCATCCGAGTTTAATCCCAAGAATCTTGCAGTACTGCATCTACCTGAAAGTCGCCTTGAATGTTTTGAATCAGTCAAGGTGTTTCAGACACTGAGCTTTCTGAATTTTGAAGGCTGCAAGTTCCTAATTGAAGTACCTAGTTTATCTAGTGCACCAAATTTGGGGGCATTATGTCTTGATGACTGCACCAATTTAATTAGAATCCATGATTCAGTTGGGTTTCTTGACAAACTTGTTTCATTAAGTGCTCAAGATTGCACCCAACTAGAAAGTTTGGTTCCTTCCATCAATTTGCCATCTTTAGTTACTTTAGATCTAAGTGGTTGCTCATGTCTTGAGAGGTTCCCAGAAGTAGTAGGAGTGATGGAGAATATTAAAGATGTTTATTTAGACCACACTCGCATAGAACAATTGCCTTGTACAATTGGAAATCTTGTTGGTCTCCAACGTTTGTTCTTGAGGGGATGCCAAATGATGGTTCAGCTACCAAACTACATATTACCTAAAGTTGAGATAATAACAACTTATGACTGTAGATTTCAATCATCTGAAAATGAAGAAAAAGTGAATCCAAAAGTGTTTGCAAATGCCATGTGTGTTTATAATGAATACGGGAAGACCTTTCTTAATGTGTATTCTAGTAATAATTGCTCCAATGATGTCATAGAAGTATGTAGTCCTTTGGAGAATGACGGTGGAAAAAATCTTGTGATTGATGAATTTGAAACAACTCGTTTTAGGCATAGAGAGGGGAGAATAAAACTGGGCAAGCTTAGAAGGAACGGATCATCAATGAGTTTTTGGTTCCGAACGAAATTCCCCCGGGTAGCTCTATGGTTTTTTGTAGAATCCGAAATAAATAAATCTGGAAAGGATTTCAAGTTGAAAGTACTCATCAATGGCACTACTCAACTCACTTCTTCATGCGAATACATATTTTATTCACAAAAAGAGACGGAACATATGCTTTGTTGTGATCTACAATGCATTGTGGAGGGTGTATTTTCAGAGAATGAGTGGAACTGGGTGGAGATTTTATGTGAGATGGAACATCTAATTCCCTATGATTCTGAAAGGGTCATGGCCCGCCAGGATTGGACCACTAAGACGATTCTAAAGTGGTCTCTCATATATGTCTACCCTGAAAACGAAAAGGATGATTTCACCTTATTTGACAGTCATGATTTTCCTTCTGTTTCAAAAAAATTAAAAATTGTAGCCCTTTATAATACAATTGGAAAAGTTCGAGAGATGAAGGGAATAATTACAAGAGCCCCTACCCCAACTCTACCATCCTTACCAGTGAACCGGAAATAG	3114	0.3748	MEQPALPSLSSFTCDWTYDVFLSFRGTDTRNNFTGNLYNYLQHQRGIQTFIDDEEIQKGEQITPTLLQAIKESRIFIVILSPNYASSTFCLTELVTILECSKLQGRLFLPIFYDVDPSHIRNITGTYAEAFAKHEVRFGDEKDKVQKWRDALHHAASVSGWHFKPGFESEYKFIGKIVEKVSMKINRVPLHVANNPVGLESRVLEVTSLLGLESGERVNMVGVYGIGGIGKSTIARAVHNFIADQFEGVCFLADIREREIHHGLVQLQETLLSEILGERDIKVGDVYKGISIIKRRLKTKKVLLILDNVDKEKQLQALVGGHDWFGSGSKIIITTRDKHLLATHGIVKLYEVKQLENEKALDLFSWHAFKNKKIDPGYVNIAKRAVSYCHGLPLALEVIGSQLFGKSLAVWKSSLDKYAGVLRKDIHEIMKVSYDDLEEDVKGIFLDIACFFNSYDIGYVKEVLYSHGFHAEGGIQELTDKCLVKIDVNGRVRMHDLIRDMGREIVRQESILEPGRRSRLWFSDDIVHVLEENKGTDTIEVIIIDLHKDRKVNWCGDAFGQMKNLRILIIRNAQFSIGPQILPDSLRVLDWCAYQSPSLPSEFNPKNLAVLHLPESRLECFESVKVFQTLSFLNFEGCKFLIEVPSLSSAPNLGALCLDDCTNLIRIHDSVGFLDKLVSLSAQDCTQLESLVPSINLPSLVTLDLSGCSCLERFPEVVGVMENIKDVYLDHTRIEQLPCTIGNLVGLQRLFLRGCQMMVQLPNYILPKVEIITTYDCRFQSSENEEKVNPKVFANAMCVYNEYGKTFLNVYSSNNCSNDVIEVCSPLENDGGKNLVIDEFETTRFRHREGRIKLGKLRRNGSSMSFWFRTKFPRVALWFFVESEINKSGKDFKLKVLINGTTQLTSSCEYIFYSQKETEHMLCCDLQCIVEGVFSENEWNWVEILCEMEHLIPYDSERVMARQDWTTKTILKWSLIYVYPENEKDDFTLFDSHDFPSVSKKLKIVALYNTIGKVREMKGIITRAPTPTLPSLPVNRK	1037

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g00432	1037	Pfam	TIR domain	18	186	IPR000157	GO:0007165
	Trre5g00432	1037	SUPERFAMILY	L domain-like	541	789	-	-
	Trre5g00432	1037	Pfam	NB-ARC domain	216	433	IPR002182	GO:0043531
	Trre5g00432	1037	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	187	-	-
	Trre5g00432	1037	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	448	IPR027417	-
	Trre5g00432	1037	Gene3D	Ribonuclease Inhibitor	534	792	IPR032675	-
	Trre5g00432	1037	Gene3D	-	14	184	IPR035897	-
	Trre5g00432	1037	SUPERFAMILY	"Winged helix" DNA-binding domain	425	531	IPR036390	-
	Trre5g00432	1037	Gene3D	-	354	438	IPR042197	-
	Trre5g00432	1037	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	780	IPR044974	GO:0006952
	Trre5g00432	1037	Gene3D	-	185	348	IPR027417	-
	Trre5g00432	1037	SMART	AAA_5	217	355	IPR003593	GO:0016887
	Trre5g00432	1037	ProSiteProfiles	TIR domain profile.	16	185	IPR000157	GO:0007165
	Trre5g00432	1037	PRINTS	Disease resistance protein signature	389	403	-	-
	Trre5g00432	1037	PRINTS	Disease resistance protein signature	296	310	-	-
	Trre5g00432	1037	PRINTS	Disease resistance protein signature	220	235	-	-
	Trre5g00432	1037	PRINTS	Disease resistance protein signature	695	711	-	-
	Trre5g00432	1037	SMART	till_3	17	158	IPR000157	GO:0007165
	Trre5g00432	1037	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	161	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g00432	Trre-Chr5	2707962	2711666	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g00432	12	787	WRKY Transcription Factor Family	AT4G12020	31.119	3.15e-87	307

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g00432	-		-	mtr:11415136	1518.06