Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00428 ATGGAACAACCAGCACTACCTTCTTTGTCTTCTTTCACATGTGATTGGACTTATGATGTTTTTATTAGCTTTAGAGGCGCTGATACTCGAAACAATTTCACTGCTTTTGCAAAACATGAGGTGAGGTTTGGAGATGAGAACGATAAGGTGCAGAAATGGAGGGATGCTTTACATCAAGCTGCTAATATGTCTGGATGGCATTTCAAACCAGGGTCTGAATCAGAGTATAAGTTTATTGGTAAGATAGTTGAAAAGGAATCAATATTGGAGCCCGGAAGACGCAGTAGATTATGGTTTAGTGATGACATTGTTCATGTTTTGGAAGAAAACAAGGGAACTGATACAATTGAAGTCATAATCGTCGACTTGCATAAAGACAGAAAAGTGAATTGGTGTGGAGAAGCCTTTGGGCAGATGAAGAACTTAAGAATTCTTATAATTAGAAATGCACTATTTTCCAGAGGTCCACAAATTCTTCCAAATAGTTTGAGAGTGCTTGATTGGAGTGGATATCAATCATCCTCTTTACCATCTGGTTTTAATGCCAAGAATCTTGCAATACTGAATCTGCCTGAAAGTCAACTTAAATGTTTCGAATCACTCAAGGTGTTTGAGATGTTGAGCTTTCTAGATTTAGAAGGGTGCAAGTTCCTAACCGAAGTGCCTAGTTTATCTAGAGTACCAAATTTAGGGGCACTGTGTCTTGATTACTGCACTAATTTAATCAGAATCCATGACTCGGTTGGGTTTCTTGAAAGGCTTGTGTTAATAAGTGCTCAAGGATGCACACAACTAGAACTTTTGGTTCCTTCCATCAACTTGCCATCTCTTGAGACTTTAGACCTTAGAGGTTGCTCACATCTAAAGAGCTTCCCAGAAGTAGTAGGAGTGATGGAGAATATAAAAGATGTTTATTTAGACCAGACTGCCTTAGAACAATTTCCTTTTACAATTGGAAATCTTGTTGGGCTCCAACGTTTGGGATTTCGATCAGCTGAAAATGAAGAAAAAGCGAGTCCAAAAGTGTTTGCAAATGCCATGTGTGTTAATAATGAATATGGAAAGTCCTTCCTTAATGTCTATGTTCGTAATATAAGCTCTAACGATGTCATAGAAGTATGCAGTCCTTTGTATAAGTCTGAACTCCGTAGTTTTATGCTTTCACAGGGCTGCATAAATGTGGGTATGCTTAGAAGGAATGAATCATCTGTAGTTTTTAGGTTCCGAAAAAAATTCCCCAGGATAGCTCTATCCTGTAAGGTAGAACCTGGAAAGCATTTTGACAACATGGTATTGGATTTCAAGTTGAATGTTCTCATCAATGGCACCAAGCAACTCACTTCGTCATGTGAATACATATTCTATACAAAAGAAAAGACGGACCAATTGTTCCAATGTGATCTACAATGCAAAGTGGAGGGTATATTTTCAGAGAATGAGTGGAAATATGTGCAGATTTTATGTGAGATTGAACATCTCTTGCCATGTGATTCTAAAATGGCCATGGCCTACCGGTATTGGACCACCAAGAGTATTCTAAAGTGGTCTTACATATACGCCTACTTAGAAAACGAAGAGGAAGCATACAACTTAGGTGGCAATACTGATTCTCCTCTGTCAACTGAACAAAATTTTCAATAG 1641 0.3821 MEQPALPSLSSFTCDWTYDVFISFRGADTRNNFTAFAKHEVRFGDENDKVQKWRDALHQAANMSGWHFKPGSESEYKFIGKIVEKESILEPGRRSRLWFSDDIVHVLEENKGTDTIEVIIVDLHKDRKVNWCGEAFGQMKNLRILIIRNALFSRGPQILPNSLRVLDWSGYQSSSLPSGFNAKNLAILNLPESQLKCFESLKVFEMLSFLDLEGCKFLTEVPSLSRVPNLGALCLDYCTNLIRIHDSVGFLERLVLISAQGCTQLELLVPSINLPSLETLDLRGCSHLKSFPEVVGVMENIKDVYLDQTALEQFPFTIGNLVGLQRLGFRSAENEEKASPKVFANAMCVNNEYGKSFLNVYVRNISSNDVIEVCSPLYKSELRSFMLSQGCINVGMLRRNESSVVFRFRKKFPRIALSCKVEPGKHFDNMVLDFKLNVLINGTKQLTSSCEYIFYTKEKTDQLFQCDLQCKVEGIFSENEWKYVQILCEIEHLLPCDSKMAMAYRYWTTKSILKWSYIYAYLENEEEAYNLGGNTDSPLSTEQNFQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00428 546 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 90 353 IPR044974 GO:0006952
Trre5g00428 546 Gene3D Ribonuclease Inhibitor 108 360 IPR032675 -
Trre5g00428 546 SUPERFAMILY L domain-like 118 384 - -
Trre5g00428 546 Gene3D - 34 90 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00428 Trre-Chr5 2686268 2689841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00428 81 334 WRKY Transcription Factor Family AT4G12020 35.793 9.94e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00428 - - mtr:11415136 670.618