Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00426 ATGTCACAGCAAACACTACCTTCTTTGTCTTCTTTCACATGTGATTGGACTTATGATGTCTTCCTCAGCTTTAGAGGCATCGATACACGAAACAACTTCACTGGCAATCTTTACAATTCTCTACAGCATCAAAGAGGTATACAAACTTTCATTGATGATGAAGAAATTCAAAAAGGAGAACAAATCACACCTACTCTTCTCCAAGCTATTAAAGAATCTAGGATTTTCATTGCTATTTTTTCCAGTAACTATGCTTCTTCAACATTTTGTTTGACTGAACTTGTCACCATCCTCGAGTGCTCCAAGTCACAAGGAAGGTTGTTTTTGCCGGTTTTTTATGACGTGGATCCATCTCATATTCGAAACCTAACTGGAACTTATGCTGAAGTTTTCGTGAAACATGAGGCGAGATTTGCCAATGAGAAGGATAAGGTGCAGAAATGGAGGGATGCTTTGCGTCAAGCTGCTAATGTGTCTGGATGGCATTTCAAACCTGGGTGTGAATCAGAATATAAGTTTATTGGAAAGATAGCTGAAGAGGTCTCTATAAAAATCAACCGTGTTCCTTTGCATGTTGCAAACAACCCAGTTGGTTTGGAGTCTCGAATGGTAGAAGTGAAATCTCTCCTCGAACTTGAGTCTGATGAGAGAGTCAACATGGTAGGCATTTGTGGAATTGGAGGAATAGGCAAATCAACAACTGCTCGTGCTGTGCATAACTTGATTGCCGATCAATTCGAAGGTGTGTGTTATCTTGCTGGCATAAGAGATAGGGCAACTAATCTTGCACAGCTCCAAGAAACACTACTTTCTGAAATACTTGGGGAAAACGATATTAAAGTGGGAGATGTTTACAGAGGAATTTCCATCATTAAAATAAGGCTCCAACGAAAGAAAATCCTTTTGATTCTTGATAATGTTGATAATCTACAGCAGTTACAGGCACTTGCAGGAGGGCATGATTGGTTCGGCTTCGGCAGCAAGATCATAATCATTACAAGAGACAAGCATTTGCTTGCTACTCATGGTATTGTGAAAGTATATGAGGTTGAAAAACTAAAAAATGAAAAGGCTCTTGAGTTGTTTAGTTGGCATGCATTTAAAAATAGAAAAATTGGTCCCGGTTATGTGGATATTGCAAAACGTGCAGTATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGATGATAGGTTCTCAATTGTTTGGAAAAAGTTTAGCTGTTTGGAAATCCTCAGTAGATAAATATGAAAGAGTCCTTCGTAAAGATATCCATGAAATTCTAAAAGTTAGCTATGATGATTTGGAAGAAAATGAGAAGGGTATTTTTTTAGACATAGCCTGTTTCTTTAATTCATACGAAATAGGCTATGTCAAAGAAATACTATACTTACATGGTTTTCACGCGGAAGATGGTATACAAGAGCTAATTGACAAATCTCTCATGAAAATTGATGCCAATGGTTGTGTGAGAATGCATGATTTGATTCAAGACATGGGCAGAGAAATTGTGAGGCAAGAATCAACATTGGAGCCTGGAAGGCGCAGCAGATTATGGTTTAGTGATGATATTGTTGATGTTTTGGAAGAAAATAAGGGAACTGATAAAATTGAAGTCATAATTGTCAACCTTCCCAAAGAAAGAAAAGTGAAATGGTGTGGAAATGCCTTTCGACGGATGAAGAACTTGAGAATTCTTATAATTAGGAATGCACGATTTTCCAGAGGGCCTCAAATTCTTCCAAATAGTTTGAGAGTGCTTGATTGGAGTGGATATCCATCATCCTCTTTACCATCTGATTTTAATCCCAAAAATCTTGCAATACTTAACCTGCCTGAAAGTTGCTTTAAATGGTTCGAATCACCCAAGGCGTTTGAGATGTTGAGCTTTCTAGATTTTGAAGGGTGCAAGTTCTTAACTAAAGTGCCTAGTTTATCAAGAGTACCGAATTTAGGGGCACTGTGTCTTGATTACTGCACTAATTTAATTAGAATCCATGACTCGGTTGGGTTTCTTGACAGGCTTGTGTTATTAAGTGCTCAAGGATGCACACAACTAGAATGTTTGGTTCCCTACATCAACTTGCCATCACTAGAGACTTTAGACCTTAGAGGTTGCTCACGTCTTGAGATTTTCCCAGAAGTAGTGGGAGTGATGGAGAATATAAAAGATGTTTATTTAGACCAGACTGCCTTAGAACAGTTTCCTTTTACAATAGGAAATCTTGTTGGGCTCCAACGTTTGTTCTTGAGGGGATGCCAAAGGATGATTCAGCTACCAAGCTACATATTGCCTAAGGTTGAGATAATAACAACTTATGGCTGTAGGGGATTTCAATCATCTGAAAATGAAGAAAAAATGAGTCCAAAAGTGTTTCCAAGTGCCATGTGTGTCTATAATGAATATGGGCAGTCCTTCCTTAATGTGTATGCTCATTATATAACCTCCAACAATGTCATTGAAGTATGTAGTCCTCTGTGTGAAACTGAACTTATTGAGTTTGAGCCTTCACGTCGAAGATTGCTTGAGGCTAAGCTTAGAAATAATAAATCATCAATAAGTTTTTGGTTCCGAAACAAATTCCCCAAGATAGTTCTATGGTTTAATGTAGAACCTGAAAATTATTTTGACAACATGGTATTGGATTTCAAGTTCAATGTACTCATCAATAGAACTAAGCAACTCACTTCTTCATGTGAATACATATTTTATACACAAAAGAATACAAACCAATTGCTTTGCTGTGGTCTACAATCCAAAGTGGAGGGTGTATTTTTAGAGAATGAGTGGAATCATGTAGAGACTTTATGTGAGATAAAACATTTCATGCCATGTGATTCGAAAAGGGTCACAGTCTACCGGGACTGGACCACTAAGAGGATTCTAAAGTGGTTTGCCATATATGTCTTCTTAGACAACGAAGAGGATTGCAACTTATTTTTCAAGCCTTTCTCCTCTGTCAATTGA 2967 0.3785 MSQQTLPSLSSFTCDWTYDVFLSFRGIDTRNNFTGNLYNSLQHQRGIQTFIDDEEIQKGEQITPTLLQAIKESRIFIAIFSSNYASSTFCLTELVTILECSKSQGRLFLPVFYDVDPSHIRNLTGTYAEVFVKHEARFANEKDKVQKWRDALRQAANVSGWHFKPGCESEYKFIGKIAEEVSIKINRVPLHVANNPVGLESRMVEVKSLLELESDERVNMVGICGIGGIGKSTTARAVHNLIADQFEGVCYLAGIRDRATNLAQLQETLLSEILGENDIKVGDVYRGISIIKIRLQRKKILLILDNVDNLQQLQALAGGHDWFGFGSKIIIITRDKHLLATHGIVKVYEVEKLKNEKALELFSWHAFKNRKIGPGYVDIAKRAVSYCHGLPLALEMIGSQLFGKSLAVWKSSVDKYERVLRKDIHEILKVSYDDLEENEKGIFLDIACFFNSYEIGYVKEILYLHGFHAEDGIQELIDKSLMKIDANGCVRMHDLIQDMGREIVRQESTLEPGRRSRLWFSDDIVDVLEENKGTDKIEVIIVNLPKERKVKWCGNAFRRMKNLRILIIRNARFSRGPQILPNSLRVLDWSGYPSSSLPSDFNPKNLAILNLPESCFKWFESPKAFEMLSFLDFEGCKFLTKVPSLSRVPNLGALCLDYCTNLIRIHDSVGFLDRLVLLSAQGCTQLECLVPYINLPSLETLDLRGCSRLEIFPEVVGVMENIKDVYLDQTALEQFPFTIGNLVGLQRLFLRGCQRMIQLPSYILPKVEIITTYGCRGFQSSENEEKMSPKVFPSAMCVYNEYGQSFLNVYAHYITSNNVIEVCSPLCETELIEFEPSRRRLLEAKLRNNKSSISFWFRNKFPKIVLWFNVEPENYFDNMVLDFKFNVLINRTKQLTSSCEYIFYTQKNTNQLLCCGLQSKVEGVFLENEWNHVETLCEIKHFMPCDSKRVTVYRDWTTKRILKWFAIYVFLDNEEDCNLFFKPFSSVN 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00426 988 PRINTS Disease resistance protein signature 294 308 - -
Trre5g00426 988 PRINTS Disease resistance protein signature 387 401 - -
Trre5g00426 988 PRINTS Disease resistance protein signature 693 709 - -
Trre5g00426 988 PRINTS Disease resistance protein signature 220 235 - -
Trre5g00426 988 Gene3D Ribonuclease Inhibitor 693 780 IPR032675 -
Trre5g00426 988 Gene3D Ribonuclease Inhibitor 541 692 IPR032675 -
Trre5g00426 988 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Trre5g00426 988 SMART AAA_5 217 353 IPR003593 GO:0016887
Trre5g00426 988 Gene3D - 186 347 IPR027417 -
Trre5g00426 988 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 161 IPR035897 -
Trre5g00426 988 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 776 IPR044974 GO:0006952
Trre5g00426 988 SUPERFAMILY L domain-like 547 783 - -
Trre5g00426 988 Pfam TIR domain 18 184 IPR000157 GO:0007165
Trre5g00426 988 Gene3D - 352 436 IPR042197 -
Trre5g00426 988 SMART till_3 17 158 IPR000157 GO:0007165
Trre5g00426 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 446 IPR027417 -
Trre5g00426 988 Gene3D - 14 185 IPR035897 -
Trre5g00426 988 Pfam NB-ARC domain 206 434 IPR002182 GO:0043531
Trre5g00426 988 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Trre5g00426 988 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00426 Trre-Chr5 2680375 2684201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00426 12 775 WRKY Transcription Factor Family AT4G12020 31.870 1.53e-92 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00426 - - mtr:11415136 1577.76