Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00425 ATGGAGAACCATAATAAGGTGCTTATGCTAATTGTGTGTACTTTCATCTTTTTCTCCATACCAATTTACTCTATTCAGCACACTCTTATTCCAAATCAGTTTATCCAATACAATGATACCCTTGTTTCTGCATCTGGAACCTTTGAAGCAGGTTTTTTCAACTTTGGAGATCCACAACTGCAATACTTTGGTATATGGTACAAGAACATATTACCTAGGACTATTGTATGGGTTGCCAATAGAGTCACGCCAGTACAAAACTCAACAGCAATGATGAAACTTACTGATCAAGGAAGTCTTGTTATTATTGATGGCTCCAAAGGCATTATCTGGAACTCCAATTCATCAAAAATTGGAGTGAAACCGGCTGTTCAGCTTTTGGATACAGGAAATCTTGTTCTGAAAGATGGAAACAACACTCGGGACTTTTTGTGGGAAAGTTTTGATTATCCTGGTAATACTCTACTTGCTGGAATGAAGCTGAAAAGTAATTTAGTTACCGGTCCATATAAATATCTTACATCTTGGCGAAACACTGAAGATCCTACTGAAGGTGAGTTTTCATTTAAGATCGATACGCATGGTTATCTTCAACAGGTTACTACAACGGGAGCAAGAATTCTGTATAGAGGAGGGTCATGGAATGGACTTCTTTTCACTGGTGTTGCTTGGCAAAGAAATAATAGAATCTTGAATTTCACAGTAGTGTTCACTGACAAAGAAGCCTCTTATCAATATGAAACTTTGATCAATTCAATTATTACTAGATTGGTGCTAGATCCAAATGGAAATACACAACGTTTTCTATGGTCAGATAACAAACAAATTTGGGAGGTTATAGCTACTAGTCCTTCAGACCAGTGTGACGATTATGCCGTGTGTGGTATCAACTCTAACTGCAATATAAATGACTTTCCAGTATGTGAATGCTTGGAAGGTTTCATGCCAAAATTTCAAACAAAATGGAAGTCATCAAATTGGTCTGATGGGTGTGTAAGGAAAACACCTTTAAATTGTCTCCATGGAGATGGATTTTTACCGTACACAAACATGAAGTTGCCAGACACGTCAACATCGTGGTTTGACAGAAGCATGACCCTTAAGGAATGTAAGACAAAGTGTTTGAAAAACTGTTCTTGCACTGCATATGCAAATTTAGATATCAGAAATGGTGGCAGTGGCTGCTTACTATGGTTTGATAATATTGTGGATATGAGAAAACATACGGGCCAAGGACAAGACATTTACATACGACTCGCATCATCAGAACTTGATCATAAAAAGAACAAGAGGAACTTGAAGATTTATGGAACTCTAGCCGGGGTTATTGCATTCATTATAGGACTAACCGTTCTTGTATTGGTTAAGTCAAAATATAGAAAGAAGCTGGATAAATCAGTTAATATAAAAAGGTTATTTCATTGGAAGCACAAGAAGGAGAAGGAAGATGGTGACTTGGCAACATTATTTGATTTTTCGACCATCACTGATGCAACAGATAACTTCTCTAACAGAAACAAGTTAGGAGAAGGTGGTTTTGGACCGGTGTACAAGGGTATAATGCTAGATGGCCAAGAGATTGCTGTTAAAAAGCTTTCTAAAACATCAGGACAAGGAATTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCTACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTGTTAATCTACGAATTCATGCCCAACAGAAGCTTGGACTGCTTTATTTTTGATCCTACACGTAGTAAATTACTAGATTGGACAAAGCGCTTGGAAATTGTTGGTGGGATTGCTCGGGGGCTGCTGTATCTGCATGAGGATTCTAGACTAAGAATCGTACATAGAGATCTCAAAACAAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCTGAGGCTAATACAAATAGAGTCATGGGAACATATGGATATATGCCTCCAGAGTATGCTGTGCATGGATCATTCTCGATAAAATCTGATGTTTTTAGCTTTGGAGTCGTTGTTCTTGAGATAATTAGCGGCAAGAAGAATAGTGGATTTTGTGACCCTCGACATCGTCTAAACCTTCTTGGGCATGCATGGAGATTATGGAGTGAAGAAAAGCCAGAGGAGTTAATAGCTGACATATTATATGATGAGGCCATATATTCAGAAATAATAAGATTTATTCATGTTGGTCTTTTGTGTGTACAACAACAACCAGAAAATAGGCCTAACATGTCATCTGTGGTCTTTATGTTAAAGGGTGAAAAGGTACTCCCCAATCCAAGTGAACCTGGTTTCTATGCAGGAAGAAATAATACAAATAGCACAGGATCTTCTTCAACCGGGTTCTCAATAAATGAAGCTTCGATGTCATTGTTAGAGGCCCGATAG 2454 0.3765 MENHNKVLMLIVCTFIFFSIPIYSIQHTLIPNQFIQYNDTLVSASGTFEAGFFNFGDPQLQYFGIWYKNILPRTIVWVANRVTPVQNSTAMMKLTDQGSLVIIDGSKGIIWNSNSSKIGVKPAVQLLDTGNLVLKDGNNTRDFLWESFDYPGNTLLAGMKLKSNLVTGPYKYLTSWRNTEDPTEGEFSFKIDTHGYLQQVTTTGARILYRGGSWNGLLFTGVAWQRNNRILNFTVVFTDKEASYQYETLINSIITRLVLDPNGNTQRFLWSDNKQIWEVIATSPSDQCDDYAVCGINSNCNINDFPVCECLEGFMPKFQTKWKSSNWSDGCVRKTPLNCLHGDGFLPYTNMKLPDTSTSWFDRSMTLKECKTKCLKNCSCTAYANLDIRNGGSGCLLWFDNIVDMRKHTGQGQDIYIRLASSELDHKKNKRNLKIYGTLAGVIAFIIGLTVLVLVKSKYRKKLDKSVNIKRLFHWKHKKEKEDGDLATLFDFSTITDATDNFSNRNKLGEGGFGPVYKGIMLDGQEIAVKKLSKTSGQGIEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDCFIFDPTRSKLLDWTKRLEIVGGIARGLLYLHEDSRLRIVHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGKKNSGFCDPRHRLNLLGHAWRLWSEEKPEELIADILYDEAIYSEIIRFIHVGLLCVQQQPENRPNMSSVVFMLKGEKVLPNPSEPGFYAGRNNTNSTGSSSTGFSINEASMSLLEAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00425 817 Pfam D-mannose binding lectin 74 177 IPR001480 -
Trre5g00425 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 182 IPR036426 -
Trre5g00425 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 764 - -
Trre5g00425 817 Pfam Protein tyrosine and serine/threonine kinase 505 770 IPR001245 GO:0004672|GO:0006468
Trre5g00425 817 Gene3D - 21 148 IPR036426 -
Trre5g00425 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 781 - -
Trre5g00425 817 CDD PAN_AP_plant 335 420 - -
Trre5g00425 817 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Trre5g00425 817 CDD B_lectin 38 151 IPR001480 -
Trre5g00425 817 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Trre5g00425 817 MobiDBLite consensus disorder prediction 787 804 - -
Trre5g00425 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 419 - -
Trre5g00425 817 SMART serkin_6 502 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00425 817 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Trre5g00425 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 577 - -
Trre5g00425 817 SMART blect_4 32 151 IPR001480 -
Trre5g00425 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Trre5g00425 817 Gene3D Hepatocyte Growth Factor 337 420 - -
Trre5g00425 817 ProSiteProfiles Protein kinase domain profile. 502 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00425 817 MobiDBLite consensus disorder prediction 784 804 - -
Trre5g00425 817 Gene3D Transferase(Phosphotransferase) domain 1 578 780 - -
Trre5g00425 817 FunFam Receptor-like serine/threonine-protein kinase SD1-8 22 148 - -
Trre5g00425 817 SMART ntp_6 340 419 IPR003609 -
Trre5g00425 817 CDD STKc_IRAK 508 775 - -
Trre5g00425 817 Gene3D Phosphorylase Kinase; domain 1 461 577 - -
Trre5g00425 817 Pfam PAN-like domain 339 405 IPR003609 -
Trre5g00425 817 SUPERFAMILY Protein kinase-like (PK-like) 487 773 IPR011009 -
Trre5g00425 817 PIRSF SRK 2 817 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00425 Trre-Chr5 2675749 2679232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00425 470 817 Receptor kinase-like Gene Family AT4G11480 51.220 3.20e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00425 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00425 - - tpra:123915364 1424.45