Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00424 ATGAAGTTGCCGGATACGTCATCATCGTGGTTTGACAAGAGCTTGAGCCTTGAGGAGTGCAAGACAAAGTGTTTGAAAAACTGTTCTTGTACTGCATATGCAAATTTAGATGTCAGAAATGGTGGTAGTGGTTGCTTACTTTGGTTTGACAACATTGTGGACATGAGAAAACATACGGACCTCGGACAAGACATTTACGTACGACTAGCATCTTCAGAACTTGATCATAAAAAGAATAAGAGGAATTTGAACAATGCATGGACTCTGGCAGGGATTATTGCATTCCTTATAGGAATAACCCTTATTGTGATGGTCACATTAGCATATAGAAAGAAGCTTGGATGTATACAAAAGTTATTTCATAAGAAGGAGAAGGAAGATGGCGACTCGGCAACAATATTTGATTTTTCGGTCATCGCTAGTGCTACAAATCACTTCTCTAACAGAAACAAGATAGGAGAAGGTGGTTTTGGACCCGTGTACATGGGCATAATGGTAGATGGCAGAGAAATTGCTGTTAAGAGGCTTTCTAAAACATCAGGACAAGGAACTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTGTTGATCTACGAATTCATGCCGAACAGAAGCTTGGACTACTTTATTTTTGATACCACACGAAGTAAATTACTGGATTGGACAAAGCGCTTGGATATTATTGATGGGATTGCTCGAGGGCTGTTGTATCTACATCAGGATTCTAGACTAAGAATCATACATAGAGATCTCAAGACAAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCAAGATCATTTATGGGAGACCAAGCTGAGGCTAATACAAATAGAGTCATGGGAACATATGGATATATGCCTCCAGAATATGCGGTGCATGGATCTTTCTCAATAAAATCTGATGTTTTTAGCTTTGGAGTCGTTGTACTTGAGATAATTAGCGGTAAGAAGAATAGTGGATTTTGTGACCCTCAACATCGTCTAAACCTTCTTGGGCATGCATGGAGATTATGGATTGAAGAAAAGCCAGAGAAGTTAATAGCTGACATATTATATGATGATGCCATATATTCAGAAATAATAAGATTTATTCATGTTGGTCTTTTGTGTGTACAACAGCAACCAGAAAATAGGCCTAACATGTCTTCTGTGGTCTTTATGTTAAAGGGTGAAAAGGTACTCCCCAATCCAAGTGAACCTGGTTTCTATGCAGGAAGAAATAATACAAATAGCACTGGATCTTCTTCGAAGGGGTGTTCAATAAATGAAGCTTCAATCTCATTGTTAGAGGCCCGATAG 1386 0.381 MKLPDTSSSWFDKSLSLEECKTKCLKNCSCTAYANLDVRNGGSGCLLWFDNIVDMRKHTDLGQDIYVRLASSELDHKKNKRNLNNAWTLAGIIAFLIGITLIVMVTLAYRKKLGCIQKLFHKKEKEDGDSATIFDFSVIASATNHFSNRNKIGEGGFGPVYMGIMVDGREIAVKRLSKTSGQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTTRSKLLDWTKRLDIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGKKNSGFCDPQHRLNLLGHAWRLWIEEKPEKLIADILYDDAIYSEIIRFIHVGLLCVQQQPENRPNMSSVVFMLKGEKVLPNPSEPGFYAGRNNTNSTGSSSKGCSINEASISLLEAR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00424 461 MobiDBLite consensus disorder prediction 431 447 - -
Trre5g00424 461 Pfam PAN-like domain 1 55 IPR003609 -
Trre5g00424 461 Gene3D Phosphorylase Kinase; domain 1 119 221 - -
Trre5g00424 461 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 439 - -
Trre5g00424 461 Pfam Protein tyrosine and serine/threonine kinase 149 414 IPR001245 GO:0004672|GO:0006468
Trre5g00424 461 SMART ntp_6 1 69 IPR003609 -
Trre5g00424 461 Gene3D Transferase(Phosphotransferase) domain 1 222 424 - -
Trre5g00424 461 CDD PAN_AP_plant 1 70 - -
Trre5g00424 461 MobiDBLite consensus disorder prediction 428 447 - -
Trre5g00424 461 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 222 425 - -
Trre5g00424 461 ProSiteProfiles PAN/Apple domain profile. 1 70 IPR003609 -
Trre5g00424 461 SUPERFAMILY Protein kinase-like (PK-like) 131 417 IPR011009 -
Trre5g00424 461 ProSiteProfiles Protein kinase domain profile. 146 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00424 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Trre5g00424 461 SMART serkin_6 146 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00424 461 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 69 - -
Trre5g00424 461 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 111 221 - -
Trre5g00424 461 CDD STKc_IRAK 152 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00424 Trre-Chr5 2672342 2674688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00424 120 431 Receptor kinase-like Gene Family AT4G23230 56.615 5.96e-127 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00424 PK_Tyr_Ser-Thr 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00424 - - tpra:123915365 790.801