Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00423 ATGGAGAACCATAATAAGGTGCTAATGCTACTGGTGTATACTTTCTTTTTTTGCTCCATGCCCACTTTCTCTAAACAGAAGAACACTCTTACTCCAAATCAGTTTATGCAATATGGTGATACGCTTGTTTCTGCAGCTGGAACCTTTGAAGCAGGATTTTTCAAATCCGGAGATCCACCACACCAATACTTTGGTATATGGTACAAAAGCATATCACCAAGGACTATTGTGTGGGTTGCCAATAGAAATACCGCTGCACAAAACTCATCAGCAATGTTGAAACTCAACGACCAGGGAACTCTTGTTCTTATTGATGGCGCCAAAGGCATTATTTGGTCCTCCAATTCATCAAGAATTGGAGTGAGACCAGTTGCTCAACTTTTGGATTCAGGTAATCTTGTTTTGAAAGATCGAAACAGAAGCAGTGAGAATGAGGATTTGTTGTGGGAAAGCTTTGATTATCCCAGTGACACAATGCTTGCTGGAATGAAGATGAAAAGTAACTTAGTTACTGGTCCATATAGATATCTCACTTCTTGGAGAACTCCTGACGATCCTTCTTTAGGTGAGTTTTCATATTGGATAGATACTCATGGTTTCCCTCAACAGGTTATTGCACAAGGCACAACAATTCTGTATAGAGGAGGTTCATGGAATGGATATCATTTCACTGGAGTTTCTTGGCAAAGACTTCATAGAGTCTTCAATTTCTCTTTTCTGTTAACTGACAAAGATGTCACTTATGAATATGAAACATTGAACAGTTCAATTATTGCTAGATTTGTGCTAGATCCATATGGAAGCCCACAACGCTTTACTTGGTCGGATCAGACACAAAGTTGGGAGGCTATAGCTACTCGTCCATTAGACCAGTGTGAACATTATGGCTGGTGTAGTATCAACTCTAAATGCAATACTAATGAATTTCCAACATGTGAATGCTTGGAAGGTTTCCTTCCAAAATTTCAAACAAAATGGAAGATATCGGATTGGTCTGGAGGGTGTATGAGGAGAACAAAATTGAATTGTCTTAATGGAGATGACTTTTTGAAGTACACAAGCATGAAGTTGCCAGACACGTCAGCATCTTGGTATGACAAGAGATTGGGCCTTGAGGAATGCAAAACAGTGTGTTTGAAAAATTGTTCTTGCACTGCATATGCAAATTTAGATATCAGAAATGGTGGTAGTGGCTGCTTACTTTGGTTTAACAACATTGTGGACATGAGAAAACATCCAGACCAAGGACAAGACATTTACATACGGCTGGCATCTTCAGAACTTGATCACAACAAGAAAAAGAGGAACATGAAGCTTATTAGGACTCTTGCAGGAGTTATTGCATTCGTTATAGGACTAATCGTTCTTGTATTGATCACATCATCATCTAGAAAGAAGATTGGGTATATAAAAAAGTTATTTTATTGGAAGCACAAGAAGGAGAAGGAAGATGGTGACTTGACAACAATATTTGATTTTTCGACCATCACTGATGCAACAAATAACTTCTCTAACAGAAACAAGTTAGGAGAAGGTGGTTTTGGACCCGTGTACAAGGGCATAATGGAAGATGGCCAAGAGATTGCTGTTAAGAGGCTTTCTAAAACATCTGCACAAGGAATTGAGCAGTTCAAAAATGAAGTGAATTTGATGGCAACACTTCAACACCGTAATCTTTTAAAACTTCTAGGTTGTTCTACTCAACAAGATGAAAAGTTGTTGATCTACGAATTCATGCCCAACAGAAGCTTGGACTACTTTATTTTTGATACTACACGAAGTAAATTATTAGATTGGACAAAGCGCTTGGAAATTATTGATGGGATTGCTCGCGGGCTACTGTATCTATATCAGGATTCTAGACTAAGAATCATACATAGAGATCTCAAGACAAGCAATATTCTTCTTGATATTGATATGGTCCCAAAGATATCAGATTTTGGTTTAGCCAAATCTATTATGGGAGACCAAGCTGAAGCTAATACAAATAGAGTGATGGGAACATGTGGATATATGTCTCCAGAATATGCAGTGCATGGATCTTTCTCAATAAAATCTGATGTTTTTAGCTTTGGAGTCGTTGTACTTGAGATAATCAGCGGTAGGAAGAATCGCGGATTTTGTGACCCTTTACATAATCTAAACCTTCTTGGTCATGCATGGAGACTATGGAATGAAGACAAGGCAAAGGAGTTAATAGCTGACATATTATATGATAAGGCCATATGTTCAAAAATAATAAGATTTATTCATGTTGGTCTATTGTGTGTACAACAGAAACCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTTATGTTAAAGGGTGAAAATATACTCCCCAGACCAAGTGAACCCGGATTCTATGCAGGAAGTGGTAATACAAATACCATAGGATCTTCTTCGAAAGTGTGTTCAATAAATGAAGCTTCACTCTCGTTGTTAGAGGGCCGATAG 2457 0.381 MENHNKVLMLLVYTFFFCSMPTFSKQKNTLTPNQFMQYGDTLVSAAGTFEAGFFKSGDPPHQYFGIWYKSISPRTIVWVANRNTAAQNSSAMLKLNDQGTLVLIDGAKGIIWSSNSSRIGVRPVAQLLDSGNLVLKDRNRSSENEDLLWESFDYPSDTMLAGMKMKSNLVTGPYRYLTSWRTPDDPSLGEFSYWIDTHGFPQQVIAQGTTILYRGGSWNGYHFTGVSWQRLHRVFNFSFLLTDKDVTYEYETLNSSIIARFVLDPYGSPQRFTWSDQTQSWEAIATRPLDQCEHYGWCSINSKCNTNEFPTCECLEGFLPKFQTKWKISDWSGGCMRRTKLNCLNGDDFLKYTSMKLPDTSASWYDKRLGLEECKTVCLKNCSCTAYANLDIRNGGSGCLLWFNNIVDMRKHPDQGQDIYIRLASSELDHNKKKRNMKLIRTLAGVIAFVIGLIVLVLITSSSRKKIGYIKKLFYWKHKKEKEDGDLTTIFDFSTITDATNNFSNRNKLGEGGFGPVYKGIMEDGQEIAVKRLSKTSAQGIEQFKNEVNLMATLQHRNLLKLLGCSTQQDEKLLIYEFMPNRSLDYFIFDTTRSKLLDWTKRLEIIDGIARGLLYLYQDSRLRIIHRDLKTSNILLDIDMVPKISDFGLAKSIMGDQAEANTNRVMGTCGYMSPEYAVHGSFSIKSDVFSFGVVVLEIISGRKNRGFCDPLHNLNLLGHAWRLWNEDKAKELIADILYDKAICSKIIRFIHVGLLCVQQKPENRPNMSSVVFMLKGENILPRPSEPGFYAGSGNTNTIGSSSKVCSINEASLSLLEGR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00423 818 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Trre5g00423 818 SMART ntp_6 344 423 IPR003609 -
Trre5g00423 818 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Trre5g00423 818 CDD B_lectin 28 155 IPR001480 -
Trre5g00423 818 Gene3D - 22 152 IPR036426 -
Trre5g00423 818 Gene3D Phosphorylase Kinase; domain 1 476 578 - -
Trre5g00423 818 SMART blect_4 33 155 IPR001480 -
Trre5g00423 818 CDD STKc_IRAK 509 776 - -
Trre5g00423 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 578 - -
Trre5g00423 818 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Trre5g00423 818 SUPERFAMILY Protein kinase-like (PK-like) 487 774 IPR011009 -
Trre5g00423 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 765 - -
Trre5g00423 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 342 423 - -
Trre5g00423 818 CDD PAN_AP_plant 339 424 - -
Trre5g00423 818 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Trre5g00423 818 Pfam Protein tyrosine and serine/threonine kinase 506 771 IPR001245 GO:0004672|GO:0006468
Trre5g00423 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 186 IPR036426 -
Trre5g00423 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Trre5g00423 818 SMART serkin_6 503 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00423 818 Gene3D Hepatocyte Growth Factor 340 425 - -
Trre5g00423 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 152 - -
Trre5g00423 818 Pfam PAN-like domain 343 409 IPR003609 -
Trre5g00423 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Trre5g00423 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 782 - -
Trre5g00423 818 Pfam D-mannose binding lectin 75 181 IPR001480 -
Trre5g00423 818 ProSiteProfiles Protein kinase domain profile. 503 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00423 Trre-Chr5 2664685 2668360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00423 446 788 Receptor kinase-like Gene Family AT4G23230 51.437 3.88e-116 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00423 PK_Tyr_Ser-Thr 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00423 - - tpra:123915364 1304.66