Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00422 ATGAAGAACCATAATAAGGTGCTAATGCTAATTGTGTGTACTTTCTTCTTTTTCTCCATGCCTACTTTCTCTAATCAGAACACTCTTACTCCAGACCAATTTATCCAATACAATGATACCCTTGTTTCTGCAGGCGGAACCTATGAAGCAGGATTTTTCAACTTTGGAGATCCACAGCGACAATACTTTGGTATATGGTACAAGAACATATCACCAAAGATTATTATTTTGTGGGTTGCCAATAGAAACACGCCAGCACAAAACTCAACAGTAATGATGAAACTTACTGATGAAGGAAGTCTTGTTATTCTTGATGGCTCCAAAGGCATTATTTGGAACTCCAATTCATCAAGAATTGGAGTGAAACCAGTTGTTCAACTTTTGGATTCAGGAAATCTTGTTCTGAGAGATGCAAACAACACTGAGAACTTTTTGTGGGAAAGTTTTGATTATCCTGGAAATACTCTACTTGCTGGAATGAAGCTGAAAAGTAATTTAGTTACTGGTCCATATAGATATCTCACATCTTGGACAAAACCTGAAGATCCTTCTACAGGCGAGTTTTCGTATAAGATAGATACACGTGGTTATCCTCAATTGGTTACTGCAAAAGGAGCAAAAATTCTGTATAGAGGAGGGTCGTGGAATGGAATTCATTTCACTGGTGTTGCTTGGCAAAGATTGTATAGAATATTTTATTTCTCATTAGTGACCACTGACGAAGAACTCTCTTATCAATATGAAAATCTTGACAATTCAACTATTACAAGAGTGGTGCTAGACCAAAATGGAATTAATCAACGTCTAACATGGTCAGTTAGGACACAAGTTTGGGAGCCTACAGCTATTCGTCCTGCAGACGGTTGTGATGCTTATGCTTTGTGTGGTACCAACTCTATTTGCTATTTTAGTGACGTTCCAAAGTGCAAGTGCTTGGAAGGTTTCGTGCCAAAATTTCAAACAAAATGGAAGTCATCAAATTGGTCTGATGGGTGTGTAAGGAAAACACATTTAAATTGTTCCCATGGAGATGGATTTTTGAATTACACAAGCATGAAGTTGCCAGATACATCATCATCGTGGTTTAACAAGAGCTTGAGCCTTGAGAAATGTAAGACAGTGTGTTTGAAAAACTGTTCTTGTACTGCATATGCTAATTTAGATATCAGAAATGGTGGTAGTGGCTGCTTACTTTGGTTTGACAACATTGTGGACATGAGAAACTTTCCGGGACAAGGACAAGACATTTACATACGACTCGCATCTTCAGAATTAGATCCTATAAAGAATAAGAGGAATTCGAAGCATGTTGGGACTATTGCAGGGGTTATTGCATTCATTATTGGACTAATCCTTATTGTAATGGTCACATTAGCATATAGAAAGAAGCTTGGATGTATACTAAAGTTATTTCACCAAAAGGAGATAGAAGATGGTGACTCGGCTACTATATTTGATTTTTCGACAATCACTAGTGCAACAAATCACTTCTCTAACAGAAACAAGTTAGGAGAAGGTGGTTTTGGACCAGTATACAAGGGCATTACGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTTTCTAAAACATCAATACAAGGAGTTGAGGAATTTAAAAATGAAGTAAAGTTGATGGCAACACTGCAACACCGAAATCTTGTAAAACTTCTTGGTTGTTCAATTCGACAAGATGAAAAGCTGTTGATCTACGAATTCATGCCAAACAGAAGCTTGGATTACTTTATTTTTGATACTATGCGAAGCAAATTACTGGATTGGACAAAGCGCTTGGAAATTATTGATGGGATTGCTCGGGGGCTGTTGTATCTGCATCAGGATTCTAGACTAAGAATCATACATAGAGATCTCAAGACAAGCAATATTCTTCTTGATAATGATATGGTCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCTGAAGCTAAAACAAATAGAGTCATGGGAACATATGGATATATGCCTCCAGAATATGCTGTGAATGGATCTTTCTCAATAAAATCTGATGTTTTTAGTTTTGGAGTCGTTGTTCTTGAGATAATTAGCGGTAAGAAGAATAGCGGATTTTGTGACCCTCGACGTCGTCTTAACCTTCTTGGGCACGCATGGAGATTATGGACCGAAGAAAGGCCAGAGGAGTTAATTGCTGACATATTATATGATGAGGCCATATGTTCAGAAATAATAAGATTTATTCATGTTGGTCTATTGTGTGTACAACAGCTACCAGAAAATAGGCCTAACATGTCATCTGTGGTCTTTATGTTAAAGGGTGAAAAGTTACTCCCCAATCCAAGTGAACCCGGGTTCTACGTAGGAAAAAATAATATGAATAGCACAAGTTCCTCCGTAAATGAAGCTACAATCTCATTGTTCGAGGGGCGATAG 2424 0.3783 MKNHNKVLMLIVCTFFFFSMPTFSNQNTLTPDQFIQYNDTLVSAGGTYEAGFFNFGDPQRQYFGIWYKNISPKIIILWVANRNTPAQNSTVMMKLTDEGSLVILDGSKGIIWNSNSSRIGVKPVVQLLDSGNLVLRDANNTENFLWESFDYPGNTLLAGMKLKSNLVTGPYRYLTSWTKPEDPSTGEFSYKIDTRGYPQLVTAKGAKILYRGGSWNGIHFTGVAWQRLYRIFYFSLVTTDEELSYQYENLDNSTITRVVLDQNGINQRLTWSVRTQVWEPTAIRPADGCDAYALCGTNSICYFSDVPKCKCLEGFVPKFQTKWKSSNWSDGCVRKTHLNCSHGDGFLNYTSMKLPDTSSSWFNKSLSLEKCKTVCLKNCSCTAYANLDIRNGGSGCLLWFDNIVDMRNFPGQGQDIYIRLASSELDPIKNKRNSKHVGTIAGVIAFIIGLILIVMVTLAYRKKLGCILKLFHQKEIEDGDSATIFDFSTITSATNHFSNRNKLGEGGFGPVYKGITVDGQEIAVKRLSKTSIQGVEEFKNEVKLMATLQHRNLVKLLGCSIRQDEKLLIYEFMPNRSLDYFIFDTMRSKLLDWTKRLEIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDNDMVPKISDFGLARSFMGDQAEAKTNRVMGTYGYMPPEYAVNGSFSIKSDVFSFGVVVLEIISGKKNSGFCDPRRRLNLLGHAWRLWTEERPEELIADILYDEAICSEIIRFIHVGLLCVQQLPENRPNMSSVVFMLKGEKLLPNPSEPGFYVGKNNMNSTSSSVNEATISLFEGR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00422 807 Gene3D Hepatocyte Growth Factor 337 418 - -
Trre5g00422 807 SUPERFAMILY Protein kinase-like (PK-like) 481 768 IPR011009 -
Trre5g00422 807 CDD STKc_IRAK 503 770 - -
Trre5g00422 807 Gene3D Transferase(Phosphotransferase) domain 1 573 774 - -
Trre5g00422 807 Pfam D-mannose binding lectin 76 177 IPR001480 -
Trre5g00422 807 PIRSF SRK 1 807 IPR024171 GO:0004674
Trre5g00422 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Trre5g00422 807 Gene3D Phosphorylase Kinase; domain 1 471 572 - -
Trre5g00422 807 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 420 - -
Trre5g00422 807 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 183 IPR036426 -
Trre5g00422 807 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 573 776 - -
Trre5g00422 807 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Trre5g00422 807 SMART ntp_6 341 420 IPR003609 -
Trre5g00422 807 FunFam Receptor-like serine/threonine-protein kinase SD1-8 22 149 - -
Trre5g00422 807 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 572 - -
Trre5g00422 807 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Trre5g00422 807 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Trre5g00422 807 Pfam PAN-like domain 340 406 IPR003609 -
Trre5g00422 807 ProSiteProfiles Protein kinase domain profile. 497 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00422 807 SMART serkin_6 497 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00422 807 Gene3D - 22 149 IPR036426 -
Trre5g00422 807 CDD PAN_AP_plant 336 421 - -
Trre5g00422 807 CDD B_lectin 27 152 IPR001480 -
Trre5g00422 807 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 759 - -
Trre5g00422 807 SMART blect_4 32 152 IPR001480 -
Trre5g00422 807 Pfam Protein tyrosine and serine/threonine kinase 500 727 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00422 Trre-Chr5 2660000 2663353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00422 478 784 Receptor kinase-like Gene Family AT4G23230 57.372 1.48e-117 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00422 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00422 - - tpra:123915365 1451.8